Cynara cardunculus var. scolymus (artichoke): 112528487
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Entry
112528487 CDS
T05604
Name
(RefSeq) pectate lyase 1-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112528487
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112528487
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112528487
NCBI-ProteinID:
XP_024995284
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Position
LG 15:complement(8323360..8325603)
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AA seq
425 aa
AA seq
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MMEKLQAFVFLFTVVFAFMVPTTIALGAPWSSDNDTQIPEASDYTSERAKLAEKASISVD
GKNSSRRSLAGCEPTNPIDNCWRCKPDWADNRQALAQCVKGFGTGTTGGAGGEIYKVTDP
SDVDAAAPVEGTLRWGVTRERPLWIIFERDMVINLIHELVITSDTTIDGRGVKVEICNGA
GLSVYKVKNVIVHGLYIHDIKETKGGTIASGEGKPGPRSEADGDAIKVFGSTQVWIDHCS
FAGGPDGLVDVTMGSTLVTVSNCKFNDHDKVMLLGADDSHSEDKIMKVTVAYNKFSTGCV
QRMPRCRWGFFQVVNNDYEKWGLYAIGGTSNPTILCQGNRFVAPDDKNKKKVTMRVGVEE
AEWKKWNWRSQDDLLLNGAVFIDSGSDPQLTPEEQAGMIPPEPASTVETLTKDAGFLVCS
PGTPC
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaagctacaagcgttcgttttcctcttcactgttgtttttgcttttatggtg
ccaactactatagccctcggtgccccctggagctcagataacgatactcagatcccggaa
gccagtgactatacaagtgaacgtgccaaacttgccgagaaggcttccatttctgtagat
ggaaagaatagttcaaggaggagcctagctggttgcgaacccacgaacccaatagacaat
tgctggagatgcaaacccgattgggcagataatcgacaagcattagcccagtgtgtgaag
ggttttggaaccggaaccaccggtggtgcaggcggagaaatctataaagtcaccgatcct
tcagatgtggacgctgcagcaccagtggaaggaacgctgcgttggggtgtcacccgagaa
cgacctttgtggatcatcttcgagagagatatggtgatcaatctcatacatgagcttgtg
attacttccgacaccacaatcgatggtagaggtgtgaaggtcgagatctgtaatggcgca
ggtctctccgtttacaaggtcaaaaacgtcatcgttcacggcctctacatacacgatatt
aaagaaactaaaggcggaactattgcaagtggagaagggaaaccaggaccaagatcagag
gctgatggtgatgctatcaaggtttttggttccacacaggtttggatcgatcattgctcg
tttgccggaggcccagatgggcttgtggatgtcaccatgggtagcactctcgtcaccgtt
tccaactgcaaattcaacgatcatgataaagtaatgttgctaggggcagatgattcgcat
tctgaagataaaattatgaaagtgacagtggcatacaacaagtttagtacaggatgtgtt
caaagaatgccaaggtgtcgatggggttttttccaggttgttaacaatgattatgagaaa
tggggattgtacgcaatcggtggtacctccaacccgactatcctctgtcaaggaaaccga
ttcgtggctcctgatgataaaaataagaaaaaggtgacaatgagggtaggtgtggaagag
gcagagtggaagaaatggaattggagatcacaggatgaccttttattaaatggagccgtg
ttcatagattccggcagtgatccacagctgacacctgaagagcaagccggaatgatacca
ccggaaccagcctccaccgtcgaaacgctcaccaaagacgctggatttctcgtatgctcg
cctggaacaccttgttaa
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