Cynara cardunculus var. scolymus (artichoke): 112528488
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Entry
112528488 CDS
T05604
Name
(RefSeq) pectate lyase 4-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112528488
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112528488
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112528488
NCBI-ProteinID:
XP_024995285
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Position
LG 15:8333844..8335453
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AA seq
404 aa
AA seq
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MDKQQFFLFFFAFGFLVPGMIARASANETAEMLELAEKASVPTRRSLSGCEPTNPIDNCW
RCKPDWADNRQAMAQCVKGFGTGTTGGAAGEIYKVTDPSDDDVANPKEGTLRWGVTRQRP
IWVTFEKDMSITLKHELVITSDTTIDGRGAKVEIANGAGLSLYQVSNVIIHGLHIHDIKE
TPGATIASGEGKPGPRAKADGDGIMCFGSSKIWIDHCSLSGGPDGLVDVTMGSTGVTISN
CKFNDHDKVMLLGADDSHSEDQVMKVTVAYNKFSTGCTQRMPRCRWGFFQVVNNDYDKWG
MYAIGGTSKPTILSQGNRYVAPDDPNKKLVTMRQPDIPEAEWKSWNWRSTGDLFENGAVF
IDSGADPQLTPEQQAGMIAPEPAASVPTLTKDAGFLTCSPGAPC
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggataaacaacagttcttccttttcttctttgcctttggttttttggtccctggtatg
atagccagggcctccgcaaacgaaacagccgagatgttggaattagccgagaaggcctcc
gtgcctacaaggaggagcctaagtggctgtgaaccaacgaacccaatagataattgctgg
aggtgcaaacctgattgggcagataaccgacaagcaatggcccaatgtgtgaaaggtttt
ggaaccggaaccaccggtggtgccgccggagaaatctataaggtcacggatccttccgac
gatgacgttgcgaatccaaaggaaggaactttgcgttggggggttacaagacaaaggcca
atctgggtgacctttgagaaagatatgtcgatcactctgaaacatgagctggtgattact
tccgacacgaccattgatggccgaggtgcaaaggtcgagattgctaatggtgcaggtctt
tccctttaccaggtcagcaatgtcatcattcatggtctccatatccatgatattaaagaa
acaccaggtgcaaccattgcaagtggagaagggaaaccaggaccaagagcaaaggctgat
ggtgatggtatcatgtgttttggctcttccaagatttggatcgatcattgctcgttgtcc
ggaggcccagatgggcttgtggatgtcaccatgggtagcactggagtgaccatttccaac
tgcaaattcaatgaccatgataaagtaatgttgctaggggcagatgattcgcattctgaa
gatcaagttatgaaagttacagtggcatacaacaaatttagtacaggatgtactcaaaga
atgccaaggtgccgatggggtttcttccaggttgttaacaacgattatgataaatgggga
atgtatgcaatcggtggtacctccaaacctaccatcctttcccaaggaaaccgatacgtg
gctcccgatgatcctaacaagaagctggtgacaatgaggcaaccagacatccctgaggca
gagtggaagtcatggaattggagatcaacaggtgatcttttcgaaaatggagccgtgttc
attgattctggtgctgatccacaactgacacctgaacagcaagccggaatgatagcaccg
gaaccagccgcctctgttccaacgctcaccaaagacgccggatttctgacatgctcgcct
ggagcaccttgttaa
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