Cynara cardunculus var. scolymus (artichoke): 112528719
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Entry
112528719 CDS
T05604
Name
(RefSeq) transcription factor SPATULA-like
KO
K28361
transcription factor SPT/ALC
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112528719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccav03000
]
112528719
Transcription factors [BR:
ccav03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
112528719
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Ribosomal_S20p
CENPU
Motif
Other DBs
NCBI-GeneID:
112528719
NCBI-ProteinID:
XP_024995520
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All DBs
Position
LG 1:complement(13969313..13972239)
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AA seq
353 aa
AA seq
DB search
MPSLLYKMANMCDIPATCSSSSPPATTDDISLFLRQILLKSSSSSSSWPSFATKQLQCEI
PPLQPVYSSGLPVPDRIPTFSTSSGAYLPANAVAYVSSSSVGTIDNDPDEYDCESEEGFE
NLMEEMAEKSNPPRNPSKRTRAAEVHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASML
DEAIEYLKQLQLRVQMLTMRNGINLCSMSVPSGVIQPRQLPRSRIGLNEGNKPADMAPLN
QEMHMNPMISLPMHCSNQSQPSIPDFSHIINPGPSSRHESSFGTQHGSFGFPNPPTEFCR
EGVFSCHRTDINSNESNSLVSQMGGKAKASSHSAKNLRGFSSTNEFTPGVMRM
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgccatctctcctctataaaatggccaacatgtgtgacataccggcgacttgttcttcg
tcttctccaccggcaaccaccgatgatatttcccttttcctccgccaaatcctacttaaa
tcatcatcatcttcttcttcttggccgtcttttgctaccaaacaattgcaatgtgaaatc
ccaccactacaaccagtttattcatccgggttacccgtaccagatcgtatccccaccttc
tctacctccagtggtgcttatttgccggcgaatgcggtggcgtacgtctcgtcttcttcc
gtggggacgatagataatgatccggatgaatatgactgcgaaagcgaggagggtttcgaa
aatttgatggaagaaatggcggaaaaatctaaccctcctcgtaatccttccaaacgaacc
agagctgcagaggttcataatttgtcagagaagaggaggaggagccggataaatgagaaa
atgaaggcgttgcagaaactgatccccaattcaaataagacggataaggcttccatgttg
gatgaagccattgaatatctcaagcagcttcagctccgagtacagatgttaacgatgagg
aatggaataaacttgtgttcaatgtctgtaccatctggagttattcagccacgacaactc
ccccgttcaagaattggcttgaacgaaggaaacaaacctgcagacatggcaccactgaac
caagaaatgcacatgaatcccatgatcagcctcccaatgcattgctccaaccaaagccag
ccatcaatccctgatttttcacatataataaatccgggaccttcatccagacacgaatct
tctttcggtactcaacatggatcatttggtttccctaatccccccacggaattttgcagg
gagggagtgttttcgtgccaccggactgatataaatagcaacgaatccaattcgttagta
tctcaaatgggagggaaagcaaaagcaagcagccattcagccaagaatctgagggggttc
agctcaactaacgaattcacaccaggggttatgaggatgtaa
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