Cynara cardunculus var. scolymus (artichoke): 112528947
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Entry
112528947 CDS
T05604
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112528947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112528947
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
112528947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
MYO6_lever
Motif
Other DBs
NCBI-GeneID:
112528947
NCBI-ProteinID:
XP_024995769
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All DBs
Position
LG 16:16700679..16708226
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AA seq
689 aa
AA seq
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MARNKEGLILLVDVGPTMHSVLPEIQKVCSLLIQKKLVYSKYDEVGVVVFGTEDTKNDLT
KEVGGYEHVTVLQPIKVVDGDLVDVMQQLPRGTVPGDFMDAIVVGMDMLIKKYQETIKGK
KRICLITNAMYPIKDPYEGTKEDQVYTIAEQMAAHGMKIDCIVFKGNQIHDTHDSIIKEN
DMLLSIFSKKTKAKAVRVESSTSLLGALRTRNISPVTIYRGDLELSSTFKIKVWVYKKTS
EEKFPTLKKYSDKAPSTDKFATHEIKIDYEYKSVQDPSKVVPPEQRIKGYRYGPQVIPIS
SAELEAVKFRPEKSVKLLGFTNASNIMRHYYMKDVNIFIADPGNKKAIIAVSALARAMKE
MNKVAILRCVWRQGQTNVVIGVLTPNVSENDNIADSFYFNVLPFAEDIREFQFPSFSNLP
ASVQPNSEQQEAADKLVMMLDLAPAGKEEALRPDFTPNPVLERFYHHLELKSKHPDAAVP
PLDATLKRITEPDPEVISQNKLVIDEFRRCFDLKENPKLKKSTRRLLRDRTSGSFGGEVV
KNEGRSTDLVTSTSTVKVETIGDSTPVPDFEAMISRRDSPEWVSKAIFGMKNKVFDLVEN
SYEGDTYPKALECLVALRRGCVIEQEPKQFNNFLHHLYRFCQEKDLSSFCEFLASKDITL
ITKTEAEDSEIAEGDARSLFVKAEPNSSK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggaagggttgattttattggttgatgttggtccaacgatgcacagt
gtcttgccagaaattcagaaagtttgttctttgttaatacagaagaagctggtttacagc
aaatatgatgaagtaggagttgttgtatttggaacagaagataccaaaaatgatctgaca
aaagaagtgggtggatatgaacacgtcacagttttacagcctatcaaagttgttgatgga
gatcttgttgatgttatgcaacaacttccgcgaggaacagttcctggagattttatggat
gccattgttgtcgggatggatatgctaattaagaaatatcaagaaacaatcaagggtaaa
aaacgtatctgtctcattacaaatgctatgtaccctatcaaagatccatatgaaggtaca
aaagaagatcaagtctacaccattgctgagcagatggctgcacatgggatgaaaattgat
tgtatcgtgtttaagggaaaccagatacatgatacacatgatagtatcattaaagaaaat
gacatgctgctgagtatattttccaagaagacaaaagcaaaggcagtgcgtgttgagagt
tccacttcattattaggtgcactaaggacacgtaatatatctcctgtaaccatatacagg
ggtgatcttgaactaagctccacatttaagataaaggtttgggtctacaagaaaacatcc
gaagagaagttccctactctcaaaaagtattcagataaagcaccttcaacagataaattt
gccactcacgaaatcaaaatagactatgagtacaaaagtgttcaggatcctagtaaagtt
gtgcccccggagcaaaggataaaaggttatagatatggacctcaagtgattcctatctcg
tctgctgaacttgaagcagtgaaattcaggccagagaagagcgtgaaacttttaggattc
acaaatgcttcaaatattatgcggcactactatatgaaagatgtcaacatctttatcgct
gatccgggcaacaaaaaggctattattgctgtttctgcgttagcaagagcaatgaaggaa
atgaataaagttgcaattttacggtgtgtatggagacaaggacaaacaaatgtcgtcata
ggagtcctgactcctaatgtatctgagaacgacaatattgcagattctttttacttcaat
gttcttccttttgctgaagacattcgagagtttcagtttccttctttcagcaaccttccg
gcatccgtgcagccaaattcagaacagcaagaagctgcagataagttggtaatgatgctg
gacctagcaccagctggtaaggaggaagctttgcggccagacttcaccccgaatcctgtt
ctggagcgtttttaccaccatcttgaactgaaatctaagcatccagatgcagctgtgccg
ccacttgatgcaactctcaaaagaattacagagcctgatcctgaagtaatatcccagaac
aagcttgtcattgatgaatttcgaagatgttttgatcttaaagagaatcctaagctgaag
aaatcaacgaggcgcttattgagggacagaacatctggatcatttggaggggaagttgtt
aagaatgaaggccggtctaccgacttagtgacctctacatctacagtcaaggtagagaca
attggggactcgactcctgtgccagattttgaagctatgatatctcgtagagatagccct
gaatgggttagtaaagcgatttttggtatgaaaaataaagtatttgacctggtggagaac
tcctacgaaggggacacttatccaaaggctctagaatgcttagttgctctccgaagggga
tgtgtcattgagcaagaaccgaagcaattcaacaacttcctgcaccatctgtatagattt
tgccaggagaaagacctatcaagtttctgtgagtttcttgcttcaaaagacatcactctc
attaccaaaactgaggctgaagacagtgaaatcgcagaaggagatgctagaagcttgttt
gtgaaagccgagccgaattcaagtaagtag
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