KEGG   Cynara cardunculus var. scolymus (artichoke): 112529042
Entry
112529042         CDS       T05604                                 
Name
(RefSeq) DNA repair protein RAD5B
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112529042
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    112529042
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-RING_2 Prok-RING_4 DEAD ResIII RING_XB3-XBAT31 zf-RING_5 zf-C3HC4_4 zf-ANAPC11 zf-RING_4
Other DBs
NCBI-GeneID: 112529042
NCBI-ProteinID: XP_024995890
LinkDB
Position
LG 16:16930293..16936787
AA seq 1144 aa
METSSIAVEGASKYIVSTEPTSKSTKLADATIDDTPEFHVKRTVTSTGGTRISTTQMIKQ
EEEEEGKDCYAGDAKCSNAKKRMMSFSEFLEATNTKVLSENDPQYLDFIKKERMDESEPI
FDVEPISVCNEADLNQKTQKGSVTKESGFNKSTHNVCVKSEQMDESEADSKVKPVSVKKE
NGFGEKCKAGEMPNLVQKEEAKPEKQKARLVQPISSMPPSVYGSNSKKVKQGAVEDMRVS
LAVIENGDFEEEADWLLVGRTAITGLSTTKGRKLEDNEIVHFAFPNADSRNRSSSWVPAK
AAIAASGIVRFSTKRSGEVGRLPMEWSKCLIPLVNSKKVKVLGRCVAAPVNLSMMQEIML
YISFYIHHSIFTEDGKTSWKLDCNSNIDSTIYPLLTLFKLLKKSPFQKAEFTPEELDSRK
RVLNLENDLNEVVSALPMVKRRKGGEPLLLEPNEDGQILSESSLNKLVGAADMYNLEEMD
PPTTLTCDLRPYQKQALYWMTESEKGVDVEKAEETLHPCWAAYRICDERATAIYVNIFSG
EATTKFPKATQMARGGILADAMGLGKTVMTISLILARPGKGTTESEENIEPRKEDQKSVS
QRPRGGTLIVCPMALLSQWKDELETHSAPGSLSVFVHYGGYRSTNPKVIAEPTVVLTTYG
VLSASYKSDPETSIFHRVDWYRVVLDEAHTIKSSRSQGAQAAFALSSYCRWCLTGTPLQN
NLEDLYSLLCFLHVEPWCNWAWWNKLIQRPYENGDKRGIKLVKAILRPLMLRRTKDTKDK
EGRPILVLPPTDIQVIECEQSEAEHDFYDALFKRSKVQFDQFVAQGKVLHNYANILELLL
RLRQCCNHPFLVMSRGDSQQFSDLNKLAKRFLDTNVDSMTPNPYKVPSKAYIEEVVDGLK
RGENSECPICLESADDPVLTPCAHRMCRECLLSSWRSPVSGLCPICRQNLRKSDLITCPT
ESKFRVDIEKNWKESAKVLKLLECLESIRRKGCGEKSIVFSQWTSFLDLLEIPLKRRKIG
FLRFDGSLSQKNREKTLKEFSETTDKMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVE
EQAIMRIHRIGQKRTVCVRRFIIKDTVEERMQQVQARKQRMIAGALTDEEVRSARLEELK
MLFR
NT seq 3435 nt   +upstreamnt  +downstreamnt
atggagacatcatccattgctgtagaaggcgccagcaaatacatcgtttcaactgaacct
acttcaaaatcaacaaaacttgcagatgccacgattgacgacacaccggaatttcatgtt
aaacggacagttacaagcaccggtgggactcgaatctcgacaacccagatgatcaagcag
gaagaagaagaggaaggtaaggattgttatgctggtgatgctaaatgtagcaacgcaaag
aaacgtatgatgtctttttctgagtttcttgaagcaaccaatactaaggttttatcggaa
aacgatccccagtatcttgattttattaagaaagaaagaatggatgaatctgaacccata
tttgatgttgaaccgatttctgtttgtaacgaagctgacttaaatcagaaaacccagaag
ggttctgttacaaaagaatctggtttcaataagagcactcataatgtgtgtgttaagtca
gaacaaatggacgaatctgaggctgattctaaagtaaaaccagtttcggttaagaaagaa
aatggtttcggtgaaaaatgtaaagcaggggaaatgcccaatttggttcagaaagaagaa
gcaaaaccagagaagcagaaggctagattggttcagccaatttcatcgatgcccccatct
gtttacggttcaaattcaaagaaagtgaagcaaggggctgtggaggatatgagggtgagt
ttggcagtcatagaaaatggggattttgaagaagaagctgattggttgttggtgggaagg
actgcaattactgggctatcgactacaaaagggagaaaactggaagacaatgagatcgtt
cactttgcttttcctaatgcagattcaagaaacagaagtagctcatgggtgcctgcaaaa
gctgcaattgctgcttctgggattgtaagattctctactaaaagatcaggagaggttggt
cgtcttccaatggagtggtcaaagtgtttaattccacttgttaattcaaaaaaggttaaa
gttcttggtagatgtgtggctgcaccagtgaatcttagcatgatgcaagagataatgctt
tacataagtttttatatccaccattcaatattcactgaagatggaaagacttcttggaag
ctggattgcaattcaaacattgattctacaatttatcctcttttgactttgtttaaattg
ttgaaaaagagcccatttcaaaaggctgaattcacaccagaggagctagattctcgtaaa
agggttctaaatcttgaaaatgatttaaatgaagttgtatcagcattacctatggtgaaa
cgacgaaagggtggtgaaccactgcttttagaacccaatgaagatggtcagattctatct
gaatcatcattaaacaagcttgttggtgctgcagatatgtataacttggaggaaatggac
cctccaacaactcttacatgtgatttgaggccataccaaaagcaggctctttactggatg
actgaatctgagaaaggtgtggatgttgaaaaagctgaagaaacgctccatccatgctgg
gcagcatataggatatgcgatgaaagggccaccgcaatttatgtaaatattttctctggg
gaagcaactaccaagtttccaaaagcaacacagatggctagaggaggaatattagcagat
gcaatgggacttggtaaaactgtgatgaccatttctttgatccttgcaagaccaggcaaa
ggaaccactgaaagtgaagagaacattgaaccaagaaaagaagatcaaaaaagtgtttct
caaagaccaaggggtggaaccctcatcgtctgtcctatggctttgctgagccaatggaag
gatgagctcgaaacccattctgcaccaggcagtttatcggtttttgttcactacggaggg
tataggagcactaacccgaaagtgatagctgagcctactgtggtcttgacaacttatggt
gttctttctgcatcttataaaagcgatccagagacgagcatttttcatagagtagattgg
tatagagtggtgttagatgaagctcataccatcaaatcttcaaggagccaaggtgctcaa
gctgcctttgcattgtcctcgtactgccgctggtgtcttactggcactcctcttcagaac
aatttggaagatctttacagtcttctgtgcttcttgcatgttgagccatggtgcaactgg
gcatggtggaacaagctaattcagaggccttatgaaaatggcgataaacgagggataaag
cttgtaaaagccattctaaggccactcatgctgaggagaacaaaagatacaaaagataaa
gaaggaaggccgattcttgttctcccaccaactgacatccaagttattgaatgtgaacaa
tcagaagccgaacatgatttctatgatgcccttttcaaaagatctaaagtccagtttgat
cagtttgtagcacaaggcaaagttcttcacaactatgctaatatccttgagctcctactt
agattgagacaatgytgcaatcacccatttcttgttatgagccgaggtgattcccaacag
ttttcggatctaaataaacttgcaaaaagatttcttgatacaaatgttgattccatgact
ccaaatccatataaggtcccaagtaaagcgtatattgaagaagttgttgatgggttaaag
cgaggtgaaaacagcgagtgtcccatatgtctagaatctgcagatgatcctgtgctcaca
ccgtgtgctcataggatgtgtcgggaatgtcttttatcaagttggcgaagcccggttagt
ggtttatgcccgatttgtaggcaaaatttgagaaaaagtgatctgattacttgcccaact
gagagtaagtttagagttgatattgagaagaattggaaggagtctgcaaaggttttgaaa
ctgttggaatgcttagaaagtataaggagaaaagggtgtggagagaaaagcattgttttt
agccagtggacttcatttttggatcttttggagattccattaaagaggagaaagattggg
tttttaagatttgatggaagtttgtcacagaagaacagagagaagactttgaaggaattc
agtgaaaccacagataaaatggtgttgttaatgtcattaaaagctggtggtgttggcttg
aatttaactgcagcttctaatgtcttcctcatggatccatggtggaatcctgcggtagag
gagcaggcgataatgagaattcatcgtatcggtcaaaagcgaaccgtttgtgtccgaaga
ttcatcattaaggatacggtggaggaacgaatgcaacaagttcaggcacggaagcaacgg
atgattgccggagctcttaccgacgaggaagtgcgatcggctcgacttgaagaactaaag
atgctttttagatga

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