Cynara cardunculus var. scolymus (artichoke): 112529274
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Entry
112529274 CDS
T05604
Name
(RefSeq) endoribonuclease Dicer homolog 1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112529274
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112529274
microRNA pathway
RISC loading complex
112529274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
Cas3-like_C_2
IcmF-related_N
Motif
Other DBs
NCBI-GeneID:
112529274
NCBI-ProteinID:
XP_024996238
LinkDB
All DBs
Position
LG 16:complement(21753616..21768340)
Genome browser
AA seq
1927 aa
AA seq
DB search
MDDETSSRLTGSVPQQDLKPSYWLDACEDISCDDLIPGEFIHLGSAAIQEGGPSNLQDDS
LDPCFFDGVLDSIPQNANIVDAPLTISSAIKAEDTLLSLLDASTSDTGNSVKRGSRPCSS
EPNKHHETEVGNKILDHNAFHKVQGCFDNQERFGKRPRIDSLSSCSRNLKERPCRKRARD
HEEKDRRDRNSIRRKEQHFNGRRGNRDMDWREGRGYWERDRLGTNDMVFRPGSWEAGCNK
DIKAPVEKNTDCNQGELKKDDDSKKKMPKEHARKYQLDVLEQARNKNTIAFLETGAGKTL
IAVLLIKSVCIDLHRQGKKMLAVFLVPKVPLVYQQAEVIREQTGYQVGHYCGEMGQDFWD
ARRWQREFEKKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY
HTTTKEKRPSVFGMTASPVNLKGVSSQMDCAIKIRNLETKLDSVVCTIKDRKELEKHVPM
PIETVVEYDKAASLWSLHEQIKQMELAVEQAAQSSSRRSKWQFMGARDAGAKEELRQVYG
VSERTEGDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQSDERANFQLDIKFQES
YLSKVVSLLQCQLSEGAVLQNNVKNMGEVDEMGCEPTCLDEIEEGELPDSHAVSGGEHVD
VVIGAAVADGKVTPKVQSLIQILLKYQHTEDFRAIIFVERVVAALVLPKVFVELPSLNFI
NSASLIGHNNSQEMRTSQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKT
VLAYIQSRGRARKPGSDYILMIERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLTGTS
KLISTEPTHGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGG
PTEYSCRLQLPCNAPFERLEGPICSSMRIAQQAVCLAACKKLHEMGAFTDMLLPDKGSGG
EGEKADENDEGDPLPGTARHREFYPEGVAKILQGDWILSGRDECDNSNFFPLYMYVVKCL
NVGSSKDPFLTQVSEFAVLLGNELDAEVLSMSTELFIARTMTTKASLVFRGCIEVTKSQL
DLLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTNKQLDPIKEIDWDIVENIIGTP
AWNNPLQRARPDVYLGTNERTLGGDRREYGYGKLRHGMALGQKTHPTYGVRGAVAQFDVV
KASGLVPDREANGIPCNEDLTKGKLMMADSSTNAEDLVGRIVTAAHSGKRFYVDSVRYDM
TAENSFPRKEGYLGPLEYTSYADYYKQKYGVELIYKQQPLIRGRGVSYCKNLLSPRFEHS
EGHEGECEETPDKTYYVFLPPELCFVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNVI
NYTVPAFKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLRYPQKHEGQLTRMRQ
QMVSNMVLYQYALTKGLQSYIQADRFAPSRWAAPGVLPVFDEDIKEAEFLFDQDRVLIEA
VTGRDEYEDDDLEDGELEGDSSCYRVLSSKTLADVVEALIGVYYVEGGKQAANHFMKWIG
IEVDFDPTEIGCSTRRSNVPDSILRSVNFDSLEGALNIKFHDKGLLVEAITHASRPSSGV
SCYQRLEFVGDAVLDHLITKHLFFMYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHVHL
RHGSSALEKQIRDFVKEVEGELSKPGFNSFGLGDCKAPKVLGDIIESIAGAIFLDSERDT
AVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRNGNLATVEVFIDGVQ
VGVAQNPQKKMAQKLAARNALAALKMKETAEAKEKADEDGKKKNGSQTFTRQTLNDICLR
RNWPMPLYRCVSEGGPAHAKRFIFAVRVNTSDKGWTDECIGEPMPSVKKAKDSAAVLLLE
LLNRWYA
NT seq
5784 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgagaccagcagcaggttaacagggagtgttccccagcaggatttaaagcct
tcttactggctggatgcctgcgaggacatctcctgcgatgatctaattcctggtgaattc
atccatttgggttccgctgccattcaagaaggtggtccctcaaatctgcaagatgacagc
ttggatccttgtttctttgatggtgttcttgatagcatcccacaaaacgctaacatcgtt
gatgctccactcacaatatcatctgccataaaagctgaagatactcttctttcactacta
gatgcttctaccagtgatactgggaacagtgtcaagagaggtagcagaccttgtagcagt
gagcccaacaagcatcatgagactgaagttgggaacaagatattggatcataatgcgttt
cacaaggttcagggatgttttgataaccaagaaagattcggaaaaaggcctcgcattgat
agtctctcttcctgtagcaggaatctcaaggaaagaccttgtaggaagagggctcgtgat
cacgaagagaaagataggagggatagaaattcaatcaggagaaaagaacagcattttaat
ggtagaagaggaaatagggatatggattggagggaaggaaggggttattgggagagggac
cgactgggcaccaacgatatggttttccgtccaggttcttgggaagctggctgtaacaaa
gacatcaaggctcctgttgagaaaaatactgactgtaaccaaggagagttaaaaaaagat
gatgattccaagaaaaaaatgccaaaggagcatgcgcgtaagtatcagttggatgttctt
gaacaagctagaaacaaaaacaccatagcctttttagaaacaggagcagggaagacactc
attgccgtccttcttataaaaagtgtgtgcattgatttgcatagacaaggcaagaaaatg
ctggctgtatttttggttccaaaggtgccacttgtttatcagcaagcagaagttattcgt
gagcagactggctaccaagtaggtcactattgtggcgagatgggtcaagacttttgggat
gctaggaggtggcaacgtgaattcgagaagaaacaggttctagtgatgaccgctcaaatt
cttttaaatatcctcagacacagcataataaaaatggaagcaataaatctgctaattcta
gatgagtgtcatcatgctgtcaagaagcatccttactctttggtgatgtcagagttctat
cacacaaccaccaaggagaaaaggccatcagtttttggaatgactgcctctcctgttaac
ctaaagggtgtctctagccaaatggattgtgctatcaagatacgtaatcttgaaacaaaa
ctagactctgttgtttgtaccattaaagatcgtaaagagcttgaaaaacatgttccaatg
ccgatagaaactgtggtggagtatgataaagcagctagtttatggtcactacatgagcag
attaagcaaatggaattggcagttgagcaagctgcacaatcaagttccagaagaagcaag
tggcaatttatgggagccagagatgctggggctaaggaggagctccgccaagtatatggt
gtctctgaaagaacagaaggcgatggggctgcgaatttaattcaaaaactgagagctatt
aactatgcacttggtgaattaggacagtggtgtgcttataaggttgcacagtcatttttg
acagccttgcaaagtgatgaaagggcaaacttccagcttgatataaagtttcaagaatcc
tatctgagcaaagtcgtttcgctattgcaatgccagctatctgagggagcagttctacaa
aataacgtgaagaacatgggtgaagttgatgagatgggttgtgaaccgacctgccttgat
gagattgaggaaggggagcttccagacagccatgctgtctctgggggtgagcatgtggat
gtggttataggagctgctgtggctgacggaaaagtgacaccaaaggtccagtccctgatc
cagatacttctcaagtatcagcacacagaggattttcgtgctatcatatttgttgaacga
gttgtggctgcccttgttcttccaaaggtttttgtggagcttccctctctaaattttatt
aattcagccagtctgattgggcacaataatagtcaagaaatgcggacttcccaaatgcag
gatactatttccaaattccgagacggccgtgtgacacttttagttgccaccagcgttgct
gaggaaggtcttgatattcgccaatgtaatgttgttattcgctttgaccttgctaaaact
gtattggcttatatccagtctcggggccgggccagaaagccagggtcagattatatcttg
atgattgaaagaggaaatttgtcacatgaggcatttctaagaaatgctagaaatagtgaa
gaaaccttgcggaaagaagccattgaaagaactgaccttagtcatcttacgggtacctcg
aaattgatttccacagagccaactcatgggacggtctaccaggtggagtcaactggcgct
gttgtgagcttaaattctgccgtcggacttattcatttctactgctctcaactacctagt
gacagatattcaatacttcgtccggagttcattatggagcgtcatgagaagccaggaggc
ccaaccgagtattcatgcagacttcaacttccctgtaatgcaccatttgaaaggcttgag
ggtcctatatgcagttcaatgcgtatcgcacaacaggctgtttgtttagctgcttgcaag
aagcttcatgaaatgggggcatttactgacatgctcttgccagacaagggaagtggggga
gaaggcgagaaagccgacgaaaatgatgaaggagatccacttcctggaactgctaggcat
agggaattctaccctgaaggtgtagctaagatccttcagggagattggattttatctggc
agagatgaatgtgataactccaacttttttcctctctatatgtatgttgtgaagtgtctt
aatgtcgggtcctcaaaagatccatttttgactcaagtttcagagtttgcagttcttttg
ggcaatgaactggatgcagaggtgttatcgatgtcaacggagctgtttatcgcacgaaca
atgacaacaaaggcatctcttgtctttcgggggtgtattgaagttactaaaagtcagttg
gatttgttgaagagttttcatgtaagattaatgagcattgtactggatgtggatgtcgag
ccatccactactccctgggatccagccaaagcatatttgtttgtgcctgttaccaataag
cagctagaccctataaaagaaattgattgggatattgtagagaatattataggaacacct
gcatggaacaacccccttcagagagctcggccagatgtctaccttggtacaaatgaacgg
acacttggtggagaccgcagggaatatggatatggcaaattacgtcatggcatggcattg
ggacagaaaacacatcctacttatggtgttagaggggctgtagcacaatttgatgttgtc
aaagcatctggattggttcctgaccgagaagctaatggaataccatgcaatgaggacttg
acaaaaggcaaactgatgatggctgattcttctactaatgcagaggatctggttggaagg
attgttactgcagctcattctggaaagaggttttatgttgattctgtacgctatgatatg
acagcagagaactcatttccaaggaaagaaggttaccttggtccacttgagtatacttca
tatgctgattactacaagcagaagtatggggtagaactaatctataagcagcaacccctg
ataagaggccgtggggtgtcttattgcaaaaatcttctgtcacctcggtttgaacattcg
gaaggtcatgaaggcgaatgcgaagagactcctgataagacatattatgtgttccttcct
cctgagctatgctttgtacatcctcttcctggatcattagttcgtggcgcacagagatta
ccttcaataatgcggagagttgaaagcatgctgcttgctgttcagcttaaaaatgttatc
aattatactgttcctgcatttaagattttggaagctttgactgcagcttcatgccaggaa
actttctgctatgaaagagcagagctgctaggagatgcctacctcaaatgggttgttagt
cgctatctcttcctcagatatccccagaagcatgaaggccagctcaccaggatgagacag
caaatggttagcaacatggtattgtaccagtatgcacttaccaagggacttcagtcgtat
atccaagcagatcgatttgctccatctagatgggctgctcctggggtactacctgttttt
gatgaagacattaaggaagcagaattcttatttgatcaagatagagtactcatcgaggct
gtaacaggaagagatgaatatgaagacgatgatttagaggatggtgagcttgagggtgat
tcaagttgttaccgggtcctctccagtaagacactggctgatgttgttgaagcattgatt
ggcgtttactatgttgaaggtggaaaacaagctgccaatcacttcatgaaatggattggg
attgaggtggattttgatcccacagagataggatgctcaacaaggcgtagcaacgttcca
gatagcatactaaggagtgtcaacttcgattccttagagggtgcactgaacatcaaattc
catgataagggtctgctggttgaagcaattactcatgcttccaggccatcttctggagtg
tcttgttaccagcggttagagtttgttggtgatgctgtcctggatcatcttattacaaag
catttattttttatgtacacagatctgccaccaggacgcttgactgatttgcgagctgct
gctgtcaataatgaaaattttgcacgtgttgctgttaaacataacctgcatgtgcacctg
agacatggttcaagtgcacttgaaaaacagatacgagattttgtgaaggaggtggaaggt
gaactgtcaaagccagggttcaactcgtttggtctgggagattgcaaagctccaaaagtc
ctaggtgacattattgaatctattgctggtgctatctttttagacagtgaacgcgacaca
gcagttgtatggaaggttttccaacctctattgcatccaatggtcactccagaaacactc
ccaatgcatccagtgcgggagttacaggaacgttgtcagcaacaggctgaaggactggag
tacaaggccacacgaaacggtaacctggctacggttgaagttttcatcgatggtgtccag
gttggtgttgctcaaaatccccaaaagaaaatggcacaaaagctagctgctcgcaatgct
ctcgctgctctgaaaatgaaagagaccgctgaagccaaggagaaggcagatgaggatggg
aagaagaagaatggcagccaaacattcacgaggcagaccttgaatgacatttgtttgcgg
agaaattggccgatgccattgtaccggtgtgtcagtgagggtggtcctgcccatgccaaa
cggtttatatttgccgtacgggtgaatacttctgataaagggtggacagacgaatgcatt
ggagaacctatgcccagtgtaaagaaagctaaagactctgctgcagttctgcttttggag
cttctaaataggtggtatgcatga
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