Cynara cardunculus var. scolymus (artichoke): 112529364
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Entry
112529364 CDS
T05604
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 14
KO
K05391
cyclic nucleotide gated channel, plant
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
112529364
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccav04040
]
112529364
Ion channels [BR:
ccav04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
112529364
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
112529364
NCBI-ProteinID:
XP_024996393
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All DBs
Position
LG 16:complement(13850809..13857564)
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AA seq
729 aa
AA seq
DB search
MDFKKEKQVRFYNGEIGKSNFEHSWQIPGKQFPEHKLSSAPLLMNGVKGRAMPISSHMGI
KFGKSRVHPEENNDSKGRRILDPGSEVILQWNRIFLFSCLVALFVDPLFFYLPSVQKEDG
SSCMMSDLNLGIVVTCLRTIADIFYMLHIAIKFRTAYISPSSRVLGRGELVMDPEKIAWR
YLKSDFFIDLVATLPLPQIVIWFIIPAIRTPNADHTTNALVLIVLLQYVPRFYLIFPLSS
QIIKATGVVTKTAWAGAAYNLVLYMLASHVLGASWYLLSFERHATCWKSTCRSDVDPMIC
SLRYLDCGSTDNDDRKQWANGTNLFGICDPDNNTSFKYGIFGDAVAKGVVSSNFFEKYFY
CLWWGLQNLSSYGQNLSTSTFIGETSFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEW
RLRRRDTEEWMRHRQLPSDLQERVRKFVQYKWLATRGVDEESILHALPTDLRRDIQRHLC
LDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVSEMLFIIRGRLDSSTTN
GGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALNEVEAFALRAEDLKF
VANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRIKKRRMAWNLSMSESSYRPDDD
DDEQGHETELSEEAASYNPNSAMQNLNVTILASRFAANTRRGILKTKDVELIKLQKPEEP
DYSADPDDD
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggacttcaaaaaggagaagcaagtcaggttttacaacggagaaattgggaaatcgaac
ttcgaacattcatggcaaattcccggaaagcaatttcctgaacacaaattgtcatcagct
ccattgttgatgaatggtgttaaaggtagagcaatgccaatttctagtcatatgggtatt
aaatttgggaaatccagagttcatccagaagaaaataatgattcaaagggcagaaggatt
ctggatcctggaagtgaagttatcttgcaatggaacaggatttttcttttctcttgttta
gtggcactttttgtggatcccttattcttttaccttccttctgtacagaaggaggatggt
tcttcttgtatgatgtctgacttgaatttggggattgtggttacttgtttacgcacaatt
gcggatatattttatatgttacatatagctattaagttcaggacagcctacatttcgcca
agttctagggtgttaggcagaggtgaacttgttatggatcctgagaagatcgcctggagg
tatttgaagtcagatttctttattgatcttgttgcaacattgcctcttccacagattgtg
atatggttcattataccggcaattagaactcccaatgctgatcacaccaccaatgcgctt
gttctgattgtcctccttcagtatgttcccagattctatttgatttttcctttgagctct
caaatcatcaaagctacaggagttgttaccaagaccgcttgggctggggctgcatataat
cttgtgttatacatgttagctagtcatgttttaggggcatcatggtacttgttgtcattt
gaacggcatgcaacatgttggaaatctacttgccgaagtgatgttgatccaatgatttgt
tcacttcgttatttggattgtggttctacagacaacgatgaccgaaagcaatgggccaat
gggacaaatctttttggtatttgtgatcctgacaacaatacaagtttcaagtatgggata
tttggagacgctgttgcaaaaggtgtcgtgtcctccaacttctttgaaaagtacttctac
tgcttgtggtggggactacaaaacttgagttcatatggacagaatttgtccacaagcacg
tttattggagaaacatcatttgccatactcattgccatcatgggacttgtattatttgcc
catttaattggaaatatgcagacctacctgcaatctattactgtaaggctcgaggaatgg
aggcttaggcggcgagatactgaagaatggatgagacatcgacaactgcctagcgactta
caagaacgtgtacggaagttcgttcagtacaaatggcttgcaactcgcggagttgatgaa
gaatctattttgcatgctttgcctactgatctacgtcgagacatccaacgccacttgtgt
cttgatctcgttcgacgggtcccctttttctctcaaatggatgatcaactacttgacgct
atatgcgagcgtttggtgtcatctctaagtacccaaggcacgtacattgtgcgggaaggc
gatcccgtctccgagatgctttttatcatccgcggaagactcgatagctcaacgaccaac
ggaggtcgaacaggtttcttcaactcgattactttgcggcccggtgacttttgtggcgaa
gagttgctcgcatgggccttactaccgaaatccaccctcaaccttccgtcttccacgaga
actgtgagagccttaaacgaagtcgaagcttttgcgttacgtgccgaagatctcaaattc
gtcgctaatcaattccgacgtttacacagcaagaaactgcaacacacgttccgtttctac
tcatatcactggcggacatgggccgcatgtttcattcaggcggcttggcggcggatcaag
aaacggagaatggcgtggaaccttagcatgagcgaatcatcatatcgacccgatgacgac
gatgatgaacaaggtcatgaaaccgaactttccgaggaggccgcatcgtacaatccgaac
tcggccatgcaaaatctcaacgtgacgattttagcttcgagatttgcggcaaacacgagg
agaggaatactgaagacgaaggatgtcgaattgatcaagctacagaagcccgaagaaccc
gactactctgccgatcccgatgacgattag
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