Cynara cardunculus var. scolymus (artichoke): 112529796
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Entry
112529796 CDS
T05604
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112529796
Membrane trafficking [BR:
ccav04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
112529796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
112529796
NCBI-ProteinID:
XP_024996970
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All DBs
Position
LG_16
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AA seq
1401 aa
AA seq
DB search
MEDTDEDFFDKLVDDVDDQFNITSSSSGKAAQLDNLNDSDKAKAGEEDDKASSTISGVLK
YESTEKQVDPGELLVSSNSFAFDNVNNEPNNGIGMAEQLDSTASGYHGIGGASGVKEVQW
SAFTAEPLDDSNNGFGSYSDFFTDFGDNFVDQTRKGDSFVNSEPNSIGNSPHVDGADGYS
HQFQEGQSYTTSGRQSTDGQDINSSQYWENLYPGWKYDANTGQWYQVNEGYDATANAQGV
DNSTSEWTVSNTKSEAAYLQQTSQSFVGDAAEKGTTESVMSWGSVSEVSHTNDSLSNWSQ
ASQGNNGYPSHMYFDPQYPGWYYDMNAQEWRALDAYNSMQTAHAQDQVDQNGFSATNSYY
GNEQKVFGGQGQIGKQSGFEVFGSQGQDYNWNGSFSKQQGSSMWQPDNVNKNSSMSYPRG
NQHVQNHYGANFPLDNNVNRQQSYDDGGTASSFNKASQVRNEFPAVSGSHSFVPSGNFSQ
PFHQSTTEQSEMMNATKAYGNQNLLSYSQPSVHQRGHQRSASTAGRSSAGRPPHALVTFG
FGGKLLVMKDATPLINSSYGTPKDSSAGSVSVLNLTEIVPGGADASSSATGVGGYFHALC
RQSFPGPLAAGNVGGRELNRWIDERIAHPTDIDYRKVGVLRLLLSLLKIASQHYGKLRSP
FGTDTTSKENDAPDVAVARLFASAKRSSAEYVDYGAFTNCLQQFPSEGQSQATAAEVQTL
LVSGRKIEALQHAQEGQLWGLALVLAAQLGDQFYVDTVRNMALRQLVAGSPLRTLCLLIA
GQPADVFSTDNRTDGGTAGAVNMFPQPVQAQLGANAMLDDWEENLAMITANRTKDDELVL
IHLGDCLWKETSNIIAAHICYLVAEANFEPYSDSARLCLIGADHWKHPRTYACPEAIQRT
EVYEYSKLLGNSQFTLLPFQPYKLIYAHMLAEVGRVSDSLKYCQSISKSLKTGRAPEVET
WRHMISSLEDRIKTYQQGGFSTNLAPGKLVGKLLNLFDSTAHRVVGGLPPPVPSTSGAGA
QNYHYHQPTGPRVSASQSTMAMSSLVPSASMEPITQKSAEGNNRRIMHNRSVSEPDFGRS
PRQDQVESSKENSADSQSKASGTSRFGRFGFGSQLFQKTVGLVLKPRQDKQAKLGETNKF
YYDEKLKRWVEEGVDPPAEEAALPPPPTMATFQNGTSDHGSKSAAKSEGALSNGSLEFSS
GSSVGHSSGIPPIPATSSQFSARGRMGVRSRYVDTFNQGGGNPSKLFQSPSASSIKSTAK
SNPKFFVPMAVPSAEQPAETFPDNMHHQTTTADENPSPPSIHSHFQSPPYTSTMQRFASM
DDISKGGTPSFPSNSSSPRSRRTVSWGGSTDERFSVSSEVKPSGEFLGMSQLSFMPSERA
VMPPATNGDSFSDDYLHEVEL
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggaggatactgatgaagatttctttgataaattggtcgatgatgttgatgatcaattt
aatatcacttcatcatcttcaggcaaggcagcccaattagataatctaaatgattctgat
aaggctaaagcaggagaagaggatgataaagcttcttctacaattagtggggttctcaaa
tacgagtcaaccgaaaagcaagtggaccccggtgagttgttagtatcttctaattcgttt
gcattcgataatgtgaataatgaacctaataatgggatagggatggcggaacaattggat
tctacagcaagtgggtatcatggaattgggggtgcttcaggtgttaaggaggtacagtgg
agtgctttcactgctgagcctcttgacgacagtaacaatgggtttggatcatactctgac
ttcttcacggattttggagataattttgttgaccagacgaggaaaggggatagctttgtt
aatagtgaaccgaattcaatcggtaattcaccacatgtggatggtgctgatggctattca
catcaatttcaagagggtcagtcctatactacatctgggagacaaagtacagatggtcaa
gatataaatagcagtcagtactgggagaatctttatcccggttggaagtatgatgcaaat
actggccaatggtatcaagtcaacgaaggttatgatgcaacagcaaatgcacagggggtt
gataattcaacttctgaatggaccgtctctaatacaaaatcagaggctgcttatttgcag
caaacttcccaatcttttgtgggggatgcagcagaaaaaggcacaaccgaaagtgtcatg
agctggggttcagtttcagaagttagtcacactaatgacagtttatcaaactggagtcag
gcatcacaaggaaataacggatatccctcacatatgtattttgatccccaatatccaggt
tggtattatgacatgaatgcccaagaatggcgtgctttggatgcatataattctatgcaa
accgctcatgctcaagaccaggtcgatcaaaatggtttttccgcaactaatagttattat
ggaaatgaacagaaagtatttggtgggcagggccagataggtaagcagtctggatttgaa
gtcttcggtagccaaggacaagactataactggaatgggtctttcagtaaacagcaaggt
tcaagtatgtggcaacctgataatgttaacaagaattcatctatgtcatatcctagaggc
aaccaacatgtacagaatcactatggtgctaattttcctttagataacaacgttaaccga
cagcaatcttatgatgatgggggaacagcttcatcttttaataaagctagtcaggttcgt
aatgagttccctgccgtttctgggtcccattcctttgttcctagtgggaactttagtcag
ccattccaccaatcaacaactgagcaaagtgagatgatgaatgccacaaaggcctatggc
aatcagaacctgttaagctattctcagccaagtgttcatcagcgtggacatcaaagatct
gcttctactgcaggaaggtcatccgctgggcgccctcctcatgctttggttacttttggt
tttggtgggaagctacttgtgatgaaggatgctactcctctcataaattcatcttatgga
accccgaaggactcaagcgctgggtcagtctctgttcttaacctgacagaaattgttcct
ggaggagctgatgcatcaagcagtgcaacaggcgtaggtggttactttcatgctctttgc
cggcaatcctttcctggtccactggctgctggaaatgttggtggtagagagttgaatagg
tggattgatgagaggattgcacaccctactgacattgattacaggaaagtaggagttcta
aggcttctcctttccttgctaaaaatagcttcacaacactatgggaaattgcgttctcct
tttggcacagacactacatcaaaggaaaatgacgctccagatgttgctgttgctagactg
tttgcatctgcaaagagaagcagtgcagaatatgttgattatggtgctttcaccaactgc
ttgcaacagtttccttcagaaggacagagccaggcaactgctgctgaagtccaaactctg
ctggtttctggtagaaagatagaggcacttcaacatgcacaggagggtcaattgtggggg
cttgcccttgttcttgcagcacaacttggtgatcagttctatgtggacaccgtcaggaat
atggctcttcgccagcttgtagcgggttcacctttgcggacgttatgcctacttattgct
ggtcaacccgcagatgtgttttcgactgacaatagaacagatggtggcactgctggtgct
gtaaatatgtttccgcagcctgtacaggctcaacttggtgctaatgctatgcttgatgac
tgggaagaaaatttagctatgattactgctaacaggaccaaagacgatgaactggtgctt
attcatcttggagactgtttgtggaaagaaacaagtaatattatcgcggcacatatttgc
tacttagttgcagaagctaactttgagccgtattcagacagtgctagactgtgtctgatt
ggtgcagatcactggaaacatccccgaacatatgcctgtccagaagccattcagaggacc
gaggtgtatgaatattcaaagcttctggggaactctcagttcaccttgctaccatttcaa
ccatataagcttatatatgcccatatgttggctgaagtaggaagagtatctgactcattg
aagtattgtcaatcaatatcaaaatctttgaaaactggccgagccccggaagtagaaaca
tggaggcatatgatttcgtccttagaggataggataaaaacttaccaacagggagggttc
tctacaaacttagctcctgggaaattagttggaaaattgctcaacctttttgatagcacc
gcacatcgtgtagttgggggactaccaccacccgtcccctcaacatctggtgctggtgcg
caaaattaccattatcatcaacccacagggcctcgggtatctgctagtcaatcaacaatg
gcgatgtcgtcattggttccgtctgcatccatggagcccatcactcagaagtctgcagag
gggaacaacagaagaatcatgcataacagaagtgtatccgaacctgactttggtcggtct
cccaggcaggatcaggttgaatcgtcaaaggaaaactctgcagattcacaaagtaaagca
tctggtacttcacgctttggtcgctttggctttggctcccagctcttccaaaagactgtg
ggtttagttctaaaacctcgccaggacaaacaggcgaaattgggcgaaacaaacaagttc
tactatgatgagaaacttaaaagatgggtagaggaaggggttgatccaccagcagaggaa
gcggcacttcctcctcccccaacaatggcaaccttccagaatggaacatcggaccatggc
tcaaaaagtgcggcaaagagcgaaggggctcttagcaacggaagcttggagttttcaagt
ggatcttctgtgggacatagttctggaattccgccaattccagccacctcaagccaattc
tcagctcgtggaaggatgggtgttcgatctaggtacgttgacactttcaaccaaggtggt
gggaaccctagcaaattattccagtcaccttccgcctcttctatcaaatcgaccgcaaaa
tctaacccgaaattttttgttcccatggctgtaccatcagccgaacagccagccgaaact
ttcccagataacatgcatcaccagactacaactgccgatgaaaacccgtcacctccttcc
atacatagccatttccaatcgcccccatatacatctaccatgcaaagatttgcaagcatg
gacgatatttcaaaaggcggaacaccctcattcccgagcaactccagctcacctcgctca
cgaagaacggtttcatggggcggaagtaccgatgaacggttctcggtttctagcgaggtg
aaaccaagtggcgagtttttaggtatgtctcaattgtcgttcatgccaagcgaacgtgca
gtaatgccgcccgcaacaaatggtgatagttttagcgacgactatcttcacgaagttgaa
ctttag
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