Cynara cardunculus var. scolymus (artichoke): 112529828
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Entry
112529828 CDS
T05604
Name
(RefSeq) WD repeat-containing protein 43
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112529828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112529828
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112529828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Utp12
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
WDR90_beta-prop_4th
Beta-prop_ACSF4
Beta-prop_WDR3_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
WD40_Gbeta
Beta-prop_HPS5
PQQ_2
Motif
Other DBs
NCBI-GeneID:
112529828
NCBI-ProteinID:
XP_024997004
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Position
LG_16
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AA seq
599 aa
AA seq
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MEPANIRDVLTSFSPSLDFLAISSGDGRIKIWDTIKGQVQTDFANIVSTDETDFFAKPEG
GHLSVDYTCMKWLSLEKKKKRKLRSSLLILGTGGGDVLALDVSAGQSKWRVSDCHPGGVT
AISSPTNGSCVYTAGVDGMICELDSMTGNLLGKFRASAKAISSMSVSSDGKLLATAAAQL
KIFSCSDHKKMQKFSGHPGAVRCMTFSDDGKYVLSSAVGERYVAVWEVDGSKKKSACCVL
AMDHPAIFIDSKCIGTAGVANSGLSVLAISEMGVCYLWSGANIKELHNSKSTKVTVSTED
SLSKNYKGAVPTIFSGKLQNFSKPVTGHVFLAHGLLIKPSFEKISIQCGTDVKLTSSMDG
ILLPLTQSQKSKKGFENQNHITALDRANTEGALLPVTKIFNVVDAESRAMPSSTKDDAEA
DQVTICLEDQLRAEGILSNDDDLTSNTMLLSKLLKGFNLEANVSQKQMRVAVQSMIPSDA
FMLLEVLLGMWQSRSLDGQYILPWVCCLLVNHSDYVKSQEPASRLLDSLYKLSKSKSEVI
QSLLQLSGRLQLVTAQINKAADKSQILKQEEEESEVEDEEELLYDEEDESSENTSDDNN
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggagccagcaaatatcagagacgtattaacttcgttcagtccatcgttggatttcctt
gctatcagttccggcgacggtcgaattaagatatgggacactattaagggccaggtgcag
acggactttgcaaatatagtgtcaactgatgaaacggactttttcgctaaacctgaaggt
ggacacctgtcagttgattatacttgcatgaaatggctatccttggagaaaaagaaaaaa
aggaagcttcgaagttcgttgcttattttaggaactgggggtggtgatgttctagctttg
gatgtctctgctggtcaatcaaagtggagggttagtgattgccatcctgggggtgtcact
gccatctcttctcctacaaatggatcatgtgtatatacggctggtgttgatgggatgata
tgtgaacttgattctatgacagggaacttgttgggcaaatttagagcctctgcgaaagct
atatcttcaatgtccgtttcatcagatgggaagcttttagcaacggcagcagctcaatta
aagatttttagttgttcggaccacaaaaagatgcagaaattttctgggcatcctggggca
gttcggtgtatgaccttctctgatgatggtaagtatgtactttcatctgctgttggcgag
cgatatgttgcagtttgggaagtagatggcagcaaaaagaaatcagcttgctgtgttctt
gcaatggaccatcctgccatctttatagatagcaagtgcataggcactgcaggtgtagcc
aactcaggtctatctgtacttgccatatcagaaatgggtgtttgttacttatggagtgga
gcaaatattaaggaattgcacaattccaagtccacaaaagtcacagtatctacggaggac
agtctttcgaagaattacaagggtgcagtccctaccatattctctggaaaattacagaat
ttttccaagcctgtgactgggcatgtttttcttgcccatggtttgctgataaagccatcc
tttgagaaaatctcaatacagtgtggtacagacgtaaagctaaccagttccatggatgga
attcttttacctctgacccagtctcaaaagtccaaaaaagggttcgaaaaccagaatcac
attacagctttagaccgtgcaaatactgaaggcgccttgcttccagttaccaagattttt
aatgttgttgatgccgaaagcagagccatgccttcatcaactaaagatgacgctgaagcg
gatcaagttaccatatgcctggaagatcagttaagagctgaaggcatcctcagcaacgat
gatgaccttacatctaacacgatgctattatccaagcttttgaagggtttcaatcttgaa
gctaacgtatcacaaaaacagatgagagtagctgttcaatctatgatacccagtgatgcc
tttatgttgttggaagtattgttgggcatgtggcaatcaagatcattagatgggcaatac
attcttccatgggtctgctgcttattagtgaatcacagtgactatgtgaaatctcaagaa
cctgcatcacgactactagattcattgtacaagctttcaaagtcaaaaagtgaggtcatt
cagtctttactgcagttgtcaggacgcttgcaactagtaacagctcagatcaataaggcg
gctgacaaaagtcaaattttgaaacaagaagaggaagaaagtgaagttgaagatgaagaa
gaattactttatgatgaagaagatgaatcatctgaaaatactagtgatgacaataactag
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