Corynebacterium canis: CCANI_04550
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Entry
CCANI_04550 CDS
T09233
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccaw
Corynebacterium canis
Pathway
ccaw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCANI_04550 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaw03400
]
CCANI_04550 (mfd)
Enzymes [BR:
ccaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCANI_04550 (mfd)
DNA repair and recombination proteins [BR:
ccaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCANI_04550 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WJY74758
LinkDB
All DBs
Position
1006279..1010022
Genome browser
AA seq
1247 aa
AA seq
DB search
MAEKAAPMLAGLLKVAATESKFRGMVNHLAEPYLHVSGVPQVRPWAVGVLAHHAPAVLVV
TATGREAEDVTAELKAMVGDKVAWFPSWETLPHERMSPGADTVGRRAEVLSNLPNLRVVV
MAARAFCQPVVEQSRTPVTICKGEEYDFAELTRELVFRGYTHVDMVAKRGEFATRGGIID
VFPPTAELPIRVEFWGDEATDIRPFSVADQRAIPDFEIDEVAIYSCRELLVDPAVASRAE
ELAVRHPGNPALVELLSKLADGTPADGMEALIPALTDAPLVPVSDLFPEGTHVLLFDPEK
IRRRIADLEATDAEFLAAGWEAAAMGANGPLSAAGLDLSSSSYRSYESLRVSAANKGQTW
WTFAPEGMMEADDADTLPLDFEPGPAPRGDLAKIDQMMKMLLDHTTDGGRAAYVAPAAGA
IKRMVDRFREQGIPTRVATPGWEPSPGEVTLYQAMSHAGLVFPKVRRHRDAAGVMPLIVV
TETDLTGNRVGDIAGAKRRPARRRHKVDPLALSPGDLVVHETHGIGRFLKMMERTIDTGN
GTSRREYVVLEYAASKRGQPCDQLFVPMESLDLLSRYVGGEKPSLSKMGGSDWKNTKRKA
RSAVREIAGELIELYAKRQSAPGHAFSVDNPWQREMEDNFPYVETEDQMAAIDAVKADME
RPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLSTFQQRMDGFP
VTIRGLSRFTPNKEAKEILAGLADGSVDVVIGTHRLIQTGVQWKNLGLVVVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAQEDKQ
VAAAIRRELLRDGQVFYVHNKVASIEKRARELRELVPEARIVVAHGQMSEDLLEHTVQGF
WDREYDVLVCTTIVETGLDIANANTLIVENSHHMGLSQLHQLRGRVGRSRERGYAYFLYP
KGSTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVR
LVGEAMEAFRALADGKVIDATDKEPKEIRVDLTVDAHIPESYINAERLRLESYRKLAAST
TEEELRRAVEEMVDRYGPIPVEVERMLAVARLRNLMRAAKLTDVGVQGTRIKVHPVELPD
SKQVRLKRMFPGATYRPAAQVVQLPFPKAGRNVTDPQLRDVELVQWVADFIATMFELDPV
NVDGSKREKSATNVVSVADRDPLAGLRVGAADEDERRRARRRKYRLR
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
gtggctgagaaggcggcccccatgttggcgggtttgttaaaggttgcggcgacggagtcg
aagtttcgggggatggtgaaccatctggcggagccgtatttgcatgtgtcgggggtgccg
caggtgcgcccgtgggctgtgggggtgttggcgcatcatgcgccggcggttttggtggtt
acggctacgggccgggaggcggaggacgtgaccgccgagttgaaggcgatggttggggat
aaggtggcgtggtttccgtcgtgggaaaccctcccgcacgaacgtatgagccctggcgcg
gatacggtggggcggcgcgctgaggtgctttccaatcttccgaacttgcgtgtggttgtc
atggcggcgcgcgcgttttgccagccggtggtggagcagtcgcgcacaccggtgaccatt
tgcaagggggaggagtatgattttgcggagctgactcgcgaactggtgttcaggggttat
acgcacgtggatatggtggctaagcgcggcgaatttgccacgcgcggcggcattatcgac
gtctttcctcctaccgccgagctgcccatccgcgttgagttttggggcgatgaggccacc
gatattcgcccattttccgtggctgaccagcgcgctatccccgattttgagatcgatgag
gtggcgatctactcctgccgggagttgctggttgacccggcggtggcgagccgggccgag
gagctcgcggtgaggcatccgggcaatcccgcattagtagaactgttgtccaaacttgcc
gatggcacaccagccgatggcatggaagcactcatccccgcgcttaccgacgccccgctt
gtccccgtttccgatctctttccggaaggtacgcacgtactgctgttcgatccggagaag
attcggcggcgcatcgcggatctggaggccaccgatgccgaattcctcgcggcaggttgg
gaggccgccgcgatgggggccaatgggccattgtcggcggccggcctggatctttcctcc
agcagttatcgctcctacgaatcgttgcgggtgtcggcggcgaataaggggcaaacgtgg
tggaccttcgcgcccgagggcatgatggaggccgacgatgccgatacgctgccattggat
tttgagccgggcccagccccgcgcggggacctagccaagatcgatcagatgatgaagatg
ttgctggatcacactacggacggtggccgcgccgcttatgtggcccccgccgccggcgcc
atcaaacgaatggtcgatcgatttcgagagcagggcattcccacacgggtggccacgccg
ggttgggagcccagccccggcgaggtgaccctgtatcaggcgatgtcgcacgccgggttg
gtgttccccaaggtgcgcaggcatcgggacgcggcgggcgtgatgccgctgatcgtggtc
accgaaacagacctcaccggcaaccgagtcggcgacattgcgggtgccaagcggcggccc
gcgcgccgccgccacaaggtggatccattggcgctcagcccgggggatttggtggtgcac
gaaacccacggcattggcaggttcctcaagatgatggaacgtacgatcgacactgggaac
ggcacttcgcggcgggaatacgtggtgctggagtacgcggcgtcgaaacgcggacaaccc
tgcgatcaactctttgttcccatggaaagcctggacctgctctcgcgctatgtgggcgga
gagaagccgagcttaagcaaaatgggcggctcggattggaaaaacaccaagcgtaaggcg
cgttcggcggtgcgcgaaatcgctggcgagctgatcgaactctacgcgaagcggcagtcc
gcgccggggcacgcattttcggtagataatccgtggcagcgggaaatggaggacaatttc
ccgtacgtggaaaccgaggatcaaatggccgccatcgacgccgtcaaggcggatatggaa
cgcccggttccaatggatcgtgtgatcgtcggcgacgtgggctacgggaagaccgaggtg
gcggtgcgcgccgcatttaaggccgtgcaggatggcaaacaagtggcagtactcgtgccc
acgaccctgctggcgcaacaacacctatccacgttccagcagcgtatggatggtttcccg
gtaaccattcgggggctatcgcggtttactccgaataaagaggcgaaggagattttggcg
gggctggccgatgggtcggtggatgtggtgatcggcacgcatcggctgattcaaactggt
gttcaatggaaaaatctggggcttgtggtggtggatgaggagcagcgcttcggagtcgaa
cacaaggaacatatcaaggcgctgcgcacccatgtggacgtgctcaccatgtccgccacg
ccgatcccgcgcaccctggaaatgtccatggcgggtatccgggaaatgtccacgatcctg
acgccgccggaggaccggcaccccgtgcttacctatgtgggggcgcaggaggataaacag
gtggcggccgccatccgccgggaattgctgcgcgacggacaggtgttctatgtgcacaat
aaggtggcttccatcgagaagcgcgcccgcgagctgcgcgaattggtgcccgaggcgcgc
atcgtggtcgcgcacggacaaatgagcgaagacctgttggaacatacggtgcagggattc
tgggatcgggaatacgatgtgctggtgtgcaccaccatcgtggaaacaggcctggatatc
gcgaacgccaacaccctgatcgtggaaaactcgcaccatatgggcctgtcccaattgcac
cagctgcgggggcgggtgggacgctcccgggaacgcggctacgcgtatttcctgtacccg
aagggttccacgctcacggaaacctcgtacgatcgcctggccaccatcgcacaaaacaac
gatctgggcgcgggcatggcggtggccatgaaggacctggaaatgcgcggcgcgggcaat
gtgctcggcgcggagcaatccggccatatcgcaggcgtgggctttgatttatatgttcgg
ctggtcggggaggcgatggaggcgttccgcgccctggcggacggcaaggtcatcgacgcc
accgataaggaacccaaggaaatccgcgtggatctcacggtggacgcgcacatcccggaa
tcgtatatcaatgcggaacggctgcggctggaaagctaccggaaactcgcggcctcaacc
accgaggaggagctgcgccgagcggtggaggaaatggtggaccgctacggtccgatcccc
gtggaagtcgaacgtatgttggcggtggcgcgattgcggaacctgatgcgggccgccaag
cttacggacgtgggtgtgcagggcacacgcatcaaggtgcacccggtggaattgccggat
tcaaagcaagtgcgcctcaagcgtatgttccccggggcgacgtaccgccccgccgcgcag
gtggtgcagctgcctttccccaaggccgggcggaatgtaacggacccgcaattgcgggac
gtggagctggtgcaatgggtcgccgatttcatagcaaccatgtttgaactggacccggtg
aacgtggacggcagcaaacgcgaaaaatccgccaccaacgtggtgtcggtggcggatcgg
gacccgctcgccgggctgcgcgtcggcgccgccgatgaagacgaacgccgcagggcgcgg
cgtcgtaaatatcggttgcgctag
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