Corynebacterium canis: CCANI_05870
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Entry
CCANI_05870 CDS
T09233
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccaw
Corynebacterium canis
Brite
KEGG Orthology (KO) [BR:
ccaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccaw03016
]
CCANI_05870 (rtcB)
Enzymes [BR:
ccaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CCANI_05870 (rtcB)
Transfer RNA biogenesis [BR:
ccaw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CCANI_05870 (rtcB)
Prokaryotic type
tRNA splicing ligases
CCANI_05870 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WJY75020
LinkDB
All DBs
Position
complement(1301827..1303029)
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AA seq
400 aa
AA seq
DB search
MARNLRSRIADINNHRPKVHIFASEIEESTVAQAQDTAKLPFVYPHVALMPDAHTGLGSS
VGTVFGTIGAVIPAAVGVDIGCGMIGVRTQFRAADLEGKELTKLRDAIIRAIPLSPGKYN
RWQLEPSADERCRELDALARENDVNLKHSPNWRQQLGSLGGGNHFIELCLDEEDMVWMFL
HSGSRGVGNKIARAHIDIAQANMVKWWVPLPNPDLAYFVEGTPEFDSYLRDLHWAQHFAF
LNREEMMDRFSRCLAAFMGQAVVEQQRINCHHNYTVKEHHFGRDVWLTRKGAIRADEGAL
ALIPGSMGTASYVVEGKGFAPALNSAPHGAGRRYSRTEARRRFTEADLAARMEGIVYRPG
DAWVDEIPDAYKDIDQVMADSKELVEIKHKLRQVLNVKGT
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacctgcgatcccgtatcgcagacatcaataatcaccggccaaaggtacat
attttcgccagcgaaatcgaggaatctaccgtcgcgcaggcgcaagataccgccaaactt
ccgttcgtatacccgcacgtagcgctcatgcccgacgcacacaccggcctcggatcttcc
gtaggcactgtgttcggaacgatcggcgccgtgatccccgccgccgtcggcgtggatatc
ggctgcggcatgatcggcgtgcgcacccaattccgcgccgccgacctggaaggcaaggag
ctgaccaagctgcgcgatgcgatcatccgcgcgatcccgctctcccccgggaaatacaat
cggtggcagctggaaccctcggcggacgaacgctgccgcgaattggacgccctggcacgg
gaaaacgacgtgaacctgaagcattcaccgaactggcggcagcagctgggatccctcggc
ggcgggaatcatttcatcgaactctgcctcgacgaggaagacatggtgtggatgttcctg
cactccggctcccgcggcgtgggaaacaaaatcgcccgcgcacacatcgatatcgcgcag
gccaatatggtgaaatggtgggttccattgcccaatccggacctcgcctacttcgtcgaa
ggcaccccagaattcgactcctacctgcgagatctccactgggcgcagcacttcgcattc
ctgaaccgtgaagaaatgatggatcggttctcccgctgcctcgccgcctttatggggcag
gccgtggtggaacagcagcgcatcaattgccaccacaactacacggtaaaggaacaccat
ttcgggcgcgacgtgtggctaacccgcaagggagccatccgggcggacgagggtgccttg
gcgctgattcccggatccatgggaaccgcatcctacgtggtggagggcaagggcttcgcg
cccgcgctaaactcggcgccgcatggggcggggcgtcgatactcgcggaccgaagcgcgc
cggcgttttaccgaggcggacctcgccgcgcgcatggaaggcatcgtgtatcggcccggc
gatgcgtgggtggacgaaatccccgacgcgtacaaggatatcgaccaagtcatggccgat
tcgaaagagcttgtggaaatcaaacacaagctgcgccaggtgctgaatgtgaaaggcacc
taa
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