Cupriavidus cauae: KZ686_15490
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Entry
KZ686_15490 CDS
T08639
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccax
Cupriavidus cauae
Pathway
ccax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZ686_15490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccax03019
]
KZ686_15490
Enzymes [BR:
ccax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KZ686_15490
Messenger RNA biogenesis [BR:
ccax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KZ686_15490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Sacchrp_dh_NADP
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
UZN49093
LinkDB
All DBs
Position
1:complement(3497613..3499175)
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AA seq
520 aa
AA seq
DB search
MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLSRAEPPARGERPRIRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGIHPQI
DQLKRGVDIVVATPGRLLDHVGQRTIDLSHVEMLVLDEADRMLDMGFIHDIRKILNVLPP
KRQNLLFSATFSDEIRALADRLLDNPASIEVARRNTTAETVAQRVYAVDRERKRELLAHL
VREHDWHQVLVFTRTKHGANRLAEQLSKEGLSALAIHGNKSQSARTRALSEFKAGTLRLL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDEHGLLRD
IERLIKRQLEQIVLPGFEPDPTIAPEPIQKGRQARGQNGGGGRGRPQGNGGGNGGGNGGG
RPAAGAPSGERRAEARPPRQPRPARQPQEAGAAPQRNGKPGGQRIGQPSGQPKGGARPAG
NGERSQSAPRAASESNGPSRNRRPGPQAALLGGQRSRQGS
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttccgaactaggcttgtctgacaagcttgtacgcgccgtggcggagcagggc
tataccacgcccacgccgatccaggcgcaagccattcccgcgatcctgaagggcggcgac
ctgctcgccggcgcccagaccggtaccggcaagaccgccggtttcaccttgccgatgctg
cagctgctgtcgcgggccgagccgccggcgcgcggcgagcggccccgcatccgcgcgctg
gtgctgacgccgacgcgcgaactggccgcgcaggtcgaagagagcgtgcgcaactacggc
aagtacctgcgcctgcgttcgatggtgatgttcggcggcgtcggcatccatccgcagatc
gaccagctcaagcgcggcgtcgatatcgtggtggccacgccgggtcgtctgctggaccac
gtgggccagcgcaccatcgatctgtcgcatgtcgagatgctggtgctggacgaggccgac
cgcatgctggacatgggcttcatccatgacatccgcaagatcctgaacgtgctgccgccc
aagcggcagaacctgctgttctccgcgacgttctccgacgagatccgcgcgctggccgac
cgcctgctcgacaatccggcctcgatcgaggtcgcgcgccgcaacaccacggccgagacc
gtggcgcagcgcgtctacgcggtcgatcgcgagcgcaagcgcgaactgctggcgcacctg
gtacgcgagcacgactggcatcaggtgctggtcttcacccgcaccaagcacggcgccaac
cggctggccgagcaactgagcaaggaaggcctgtcggcgctggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtccgagttcaaggccggcacgctgcggctgctg
gtggcgaccgacatcgccgcgcgcggcatcgatatcgaccagctgccccatgtggtcaac
ttcgacctgcccaacgtgccggaagactatgtgcaccggatcggccgtaccggccgtgcc
ggcgccgagggcgaggcggtgtcgctggtctgcgtcgacgagcatggcctgctgcgcgac
atcgagcgcctgatcaagcgccagctcgagcagatcgtgctgccgggcttcgaaccggat
ccgaccatcgcccccgagccgatccagaagggccgccaggcgcgcggccagaatggcggt
ggaggacggggacgtccgcaggggaatggcgggggcaatggtggtggcaatggtggcggc
aggcccgctgccggcgcgccctcgggcgagcgccgggcggaagcccggccgccgcgccag
ccgcgtccagcccgccagccgcaggaggccggcgccgcgccccaacgcaatggcaagccc
ggcggtcagcgcatcggtcaacccagcggacagcccaagggcggtgcccgcccggccggc
aacggcgagcgttcgcagtcggcaccgcgcgcggcgtccgagtcgaatggtccctcgcgc
aaccgccggcccggcccgcaggccgcgctgctcggcggacagcgctcgcggcaggggtcc
tga
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