KEGG   Cupriavidus cauae: KZ686_19150
Entry
KZ686_19150       CDS       T08639                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ccax  Cupriavidus cauae
Pathway
ccax03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccax00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KZ686_19150 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccax03400]
    KZ686_19150 (ligD)
Enzymes [BR:ccax01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KZ686_19150 (ligD)
DNA repair and recombination proteins [BR:ccax03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KZ686_19150 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: UZN52200
LinkDB
Position
2:833604..836615
AA seq 1003 aa
MATKRAAAKQPAKAATKQTGKDNATAAATGSTARSSTRSAPRAATRPSAPRAARGASPDP
LQRYRTMRDFGTTAEPAGRALARHAAPKASEGLSFVVQKHAARRLHYDFRLELDGTLKSW
AIPKGPSLDPADKRMSVHVEDHPLEYANFEGVIPEKQYGAGTVIVWDRGTWIPIGDPHQG
YRDGKLKFELQGEKLHGAWTLVRMRGRDERQEPWLLIKERDDAARPAAEFDITEAMPDSV
LGGGALEPDGKIAREASTKAASKTATKTATRTATRTATKSAAGASTKAAKKTASGKSAAD
SKTAGNKRSATGAIQLPPGARRAALPLTLAPQLATLVQGPPADAQNWVYEVKFDGYRVLA
RIDGADVKLFTRNGHDWTSKLKTLARELGTLNLPSAWLDGEIVIVDKDGSTDFQALQNAF
DSDRTDAIQFFVFDVPYYAGHDLRQVALAERRDLLRRVFEEHNVSAHLRFSESFEAGPEE
ILSAACRLRLEGLIGKRVDAPYVSARSPNWIKLKCSERQEFVIGGFTEPKGTRNGLGALL
LGIHDEAGRLVYAGKVGTGFDVRTLDTIRAKLDALRTDASPFDRMPAIAKGVKGIWVRPK
AVAEVSFGSWTRDGLIRHAVFHGLRSDKSASAIGKEKAMPAPGKTVDKSEGRAKSAGSRG
KAEDRAERKAEDKPAKARGKAAKAAQAETADATPPAKPARTKASSGREQIGNVRVSHADR
VIDPSTGATKGDLVRYYEAVAPRMLPELRGRPLAVLRGPSGVGGELFFQKHADTFNIAGV
NRLDPSLWPGHPPMIEIASETGIVAAAQLNVIEFHTWNADKRQIEKPDRVIFDLDPGEGV
PWKHVVEAAALTKGMLDELELTAFLKTSGGKGLHVVVPIARRLGWDEVKDFAQQLVVHMA
RTIPQRFVSKSGPRNRVGKIFIDYLRNGRGATTVAAFSARARPGLGVSIPCSWDELPSLR
SGAQWTIANALARIEETEHADPWADYGSTRQTLTAAIRRLGNG
NT seq 3012 nt   +upstreamnt  +downstreamnt
atggcaaccaagcgagcagcagcgaagcagccggccaaggcggcaacgaagcaaacgggc
aaggacaacgcgacggccgcggcgacaggctcgaccgcgcgctcgtccacgcggtcggcc
ccacgcgccgcgacgcgtccgagcgcgccgcgcgccgcgcgtggcgcaagccccgacccg
ctgcagcgctatcgcaccatgcgcgacttcggcacgacggcggaaccggccggccgtgcg
ctggccaggcacgccgcgccaaaagcgagcgagggactgtccttcgtcgtgcagaagcac
gcggcgcgccgcctgcactacgacttccgtctggagctcgacggcacgctcaagagctgg
gccattcccaagggtccgagcctcgatccggccgacaaacggatgagcgtccatgtcgag
gaccacccgctcgaatatgcgaacttcgagggcgtgattcccgaaaagcagtacggcgcc
ggcaccgtgatcgtctgggaccgcggcacctggataccgatcggcgatccgcatcagggc
tatcgcgacggcaagctcaagttcgagctgcagggcgagaagctgcatggggcctggacg
ctggtgcgcatgcgcggccgggacgagcggcaggaaccgtggctgctgatcaaggagcgc
gacgacgcggcgcggccggccgcggagttcgatatcaccgaggcgatgccggacagcgtg
ctgggcggcggcgcgctggagccggacggcaagatcgcgcgcgaggcgtcgacaaaggcg
gcgtcgaagaccgcgacgaagaccgcaaccaggacggcaaccaggacggcgacgaaatcc
gccgccggcgcatcgacgaaagccgcgaagaaaacagcctcgggcaaatcggcggccgac
agcaagaccgccggcaacaagcggtccgcgaccggcgccatccagcttccaccgggcgcg
cgccgcgccgcgctgccgctgacgctcgcaccgcaactggcgacgctggtgcaagggccg
cccgccgatgcgcagaactgggtctacgaggtcaagttcgatggctatcgcgtgctggcc
cgcatcgacggcgccgacgtcaagctgttcacgcgcaacggccacgactggacgtcgaag
ctcaagacactggcgcgcgagctcggcacgctgaatctgccgtcggcctggctcgacggc
gagatcgtcatcgtcgacaaggacggcagcaccgacttccaggcgctgcagaacgccttc
gacagcgaccgcaccgacgccatccagttcttcgtgttcgacgtcccctactatgccggc
cacgatctgcggcaggtggcgctggccgagcgccgcgacctgttgcggcgggtgttcgag
gagcacaacgtctcggcacatctgcgcttcagcgagagcttcgaggccggccccgaggaa
atcctcagcgcggcctgccggctgcggctcgaggggctgatcggcaagcgcgtcgatgcg
ccctatgtctcggcgcgctcgccgaactggatcaagctcaaatgcagcgagcggcaggag
ttcgtgatcggcggctttaccgagcccaagggcacccgcaatggcctgggcgccctgctg
ctgggcattcacgacgaggcgggacggctggtctatgccggcaaggtcggcaccggcttc
gatgtgcggacgctcgatacgatccgggccaagctcgacgccctgcgcaccgatgcctcg
ccgttcgacaggatgcctgcgatcgccaagggggtgaagggcatctgggttcggcccaag
gcggtcgccgaggtgtcgttcggctcgtggacgcgcgatggcctgatccgccatgcggtg
ttccatggcctgcgatccgacaagagcgccagcgcgatcggcaaggagaaggcgatgccc
gcaccgggcaagacagtggacaaaagcgagggccgggcgaaatcggcggggtcgaggggc
aaggcggaggacagggccgaacgcaaggccgaagacaagccggcgaaggccagaggaaag
gctgccaaggccgcccaggccgagacagcggatgccacgccaccggccaaacccgcccgg
acgaaggcctcctccggccgcgaacagatcggcaacgttcgcgtcagccatgccgaccgc
gtcatcgatccgtcgaccggcgcgaccaagggcgatctggtgcgctactacgaagcggtg
gcgccgcgcatgctgccggaattgcgcggccgcccgctggcggtgctgcgcggcccgtcg
ggggtcggcggcgagctgttcttccagaagcatgccgataccttcaatatcgccggcgtc
aaccggctcgatccgtcgctatggccgggccacccgccgatgatcgagatcgccagcgag
accggcatcgtcgccgcggcgcagctcaacgtgatcgagttccacacctggaacgccgac
aagcgccagatcgagaagcccgatcgcgtgatcttcgacctcgaccccggcgagggcgtg
ccgtggaagcatgtggtcgaggccgccgcgctgaccaagggcatgctcgacgaactcgag
ctgacagccttcctgaagaccagcggcggcaagggcctgcacgtggtggtgccgatcgcc
cggcggctcggctgggacgaggtcaaggactttgcccagcagctggtcgtgcatatggca
aggaccatcccgcagcgcttcgtctccaagagcgggccgcgcaaccgcgtcggcaagatt
ttcattgactacctgcgcaacgggcgcggcgccaccacggtcgccgccttttcggcgcgc
gcccggcccggcctgggcgtgtcgatcccgtgcagctgggacgaactgccctcgctgcgc
tccggcgcccagtggaccatcgccaacgccctggcgcgcatcgaggagaccgagcacgcc
gatccctgggcggactacggcagcacgcggcagacgctgaccgcggcaatccggcgcctg
ggcaacggctga

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