Caretta caretta (Loggerhead turtle): 125620775
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Entry
125620775 CDS
T09292
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125620775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125620775
03036 Chromosome and associated proteins [BR:
ccay03036
]
125620775
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125620775
Coactivators
SAGA/TFTC/STAGA complex
125620775
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125620775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
125620775
NCBI-ProteinID:
XP_048672860
LinkDB
All DBs
Position
12:complement(24110444..24323775)
Genome browser
AA seq
1105 aa
AA seq
DB search
MAAGASDPLEEMLLFSEEVDEKAVSDLVGSLESQLAGGRGSAEGPSPNSSPPSHQQQEHQ
GTLVEGGSLVQQQQQGHPAPPHFPGAGEAARCPSAVGSPTPAQGTPPALSAPAAAAGRGA
SVNSSSMQQSHGAAPRSITPSPPAAPVSLQAAAPPPPAGAPAQPVNNHVDVNATALAAGS
GAREVESPRPGCSPPAAAAGAVNSVLLLNSEAATAGGSPEAAGAVTPAAAASRELSKAVM
LGSTAAAAPPPPAALSLLQRPALHTVPPAAHSANGTSSSAPVGVTQSLKAGCAPAAITQV
VNHQNPSVGHNKPESSTAQTKLLTHNPAVNALSSSTSSVPTMNLVTHPAQSSVANCAPVV
SSTITLNAISKPTVNIIGPPGSALGVAKSATAVPVVSAVPQSLSPRPAVGTAQRIVAPQL
IVRPPQQTTIQLPPGFTIPPGMVLVRTEAGQLVMVPQQVLAQAQVQAQVQTQGQSPASIS
PRLPVPTSGPVFRLTASQQPTSVAASPVHLGLPLQAKVVQSTATSVRATSTATLPGVSTL
SHTTVSVATTSAQSLIKTTVATGTPATQQPTVIFGGQTPAQPQGQPRLPLPPHMTAQVPA
QPQVIPSSPVPGTTVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSRNVKALVQDLLD
AKIDPEEFTGCLQSELKSSPQPYLVPFLKKSLPALRQSLLNSQHSVLQGQPSQQPLQQTK
LSQVIPQPASGSISSSVTTQTVGIRQPNSICTFVSNTVQPPHVKLVQSNQSSQLQIIQST
SAQTVKRNPACQTTQIRMPVVITQTIRPQGTVGKAPTIQASPSPGGFGVQVSANQKMKLN
DPGGGSFRDDDDINDVASMAGVNLNEESARIMATNSDLVGTQIQSCKDEPFLAAIPLHKR
ILEMAKKLGMTDVPAEVVTFISHATQNRLRTVIEKVTMVTQHRMESHKDDEWYEQATDVR
SQLKFFEQLERLEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQ
RDANLTALAAIGPRKKQKLDSPGLLTIGGEALGMTSGGQAGFGSPSSRQYARQKITRVNL
RDFIFYMEQERETSHSLLLYRALLK
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgcctcggaccccctggaagagatgctgctcttctctgaagaggtggac
gagaaggcggtcagcgacctggtgggctccctggaatcgcagctggccggcgggcggggc
tccgccgagggcccctcccctaacagcagccccccatcccaccagcagcaagagcaccag
gggaccctggtggagggcggcagcctagtccagcagcagcagcaagggcatcctgctcct
cctcatttccccggggcaggggaggcagccaggtgcccaagtgccgtgggcagcccaacc
ccagcccaggggacacccccagccttgtccgccccagcggcggcggccgggcggggagcg
agtgtaaacagtagtagcatgcagcaatcacatggagcagctcctcgcagcatcaccccg
agtccacctgctgcccctgtctcactgcaagccgctgccccacctccgcctgctggcgcc
ccagcccagcctgtcaacaaccacgtggatgtcaatgccactgctctcgctgctggcagt
ggtgcccgggaagtggagagtcccagacctgggtgtagtcctcctgcagcagccgctggt
gcggtgaacagtgtgttgctgcttaactccgaggccgccactgctggggggtcgcctgag
gctgccggtgctgtcactccagcagccgcagcaagtcgggaactttcaaaggcggtaatg
ctgggtagtacagctgctgctgctcctcctcctcctgctgctctctcccttctccagaga
cctgcactgcatactgttcctcccgctgcacacagtgcgaatggcacttcctccagcgct
cctgtgggtgtcactcagagcctaaaggctggttgtgccccagcagcaataacacaagtt
gtcaaccatcagaatccgtctgtcggccacaacaaaccagaatcctctacagcacagact
aaactcctcacacacaatcctgcagtaaatgcactcagtagctctaccagttctgttcct
acaatgaatcttgtcacccatccagcccaaagttcagtagccaactgtgcccctgtagtg
tccagcaccatcaccctcaatgctatatctaaacccacagtaaatattatagggccacct
ggctctgctcttggtgtagccaaatcagccactgctgtacctgtcgtctctgcagttccc
cagtcgctgtcacccaggcctgcagtaggcactgctcagagaatagttgcaccacaattg
attgttagaccgcctcagcagactacaatccagttgcctccaggttttactataccacct
ggtatggtcttggtgcgcacagaagctggacagcttgtaatggtacctcagcaggtttta
gcccaggctcaagtgcaagctcaagtacaaacacaggggcaaagtcccgccagcatctca
cccaggcttccagtgcccacaagtggtccagtgtttcgtttaacagcaagccagcaacca
acttctgtagccgcatctcctgtccaccttggacttccactgcaagccaaagttgtacag
tcgactgctacatcagttcgtgctacatctactgcaaccttacctggagtctccacgctg
tcacacactacagtatcagtagctaccacaagtgctcagagcttaattaaaacaacagta
gcaactggaactccagcaactcaacaacctacggtaatttttggaggacagaccccagca
caaccccagggtcagcctcgattgccacttccacctcatatgacagcacaagtaccagca
cagccccaggtcatacctagttctcctgtgccagggactacagttgtatcacaggaaatg
caagagaatgtgaagaaatgcaaaaactttttagctacgctgataaaacttgcttcccat
aattcaccttctccagaaacatcccgtaatgtgaaagctctggttcaggatttgctggat
gcaaagattgatccagaagaatttacaggctgccttcagtccgagctgaaatcatctcct
cagccttatctagtacctttcctgaagaaaagtctgccggcattgagacaatctttattg
aatagccaacattcggttttgcaaggacagccatctcagcagccgcttcaacaaaccaag
ctgtcacaagttatacctcaacctgcctctggaagtatttcctctagtgtcacaactcag
acagtaggaataaggcaaccaaacagcatttgcacatttgtatcaaatacagttcagcct
cctcatgttaaactagtacaatcaaatcagagttctcaactgcagattatccagtcaaca
tctgctcaaactgtgaaacgaaaccctgcttgccagactacccagattaggatgccagtg
gtaataactcagaccattagaccacaaggcacagtagggaaggcaccaacaatacaagcc
agcccaagtcctgggggctttggtgttcaggtctctgcaaatcagaaaatgaagctgaat
gaccctggaggtggatctttcagagatgacgatgacatcaatgatgttgcttctatggct
ggagttaaccttaatgaagagagtgcccgaattatggcaaccaactccgacttggttgga
acccagatacagtcttgtaaagatgaaccctttcttgctgctatccctttacataaacga
atactagaaatggctaaaaaattaggaatgacagatgtgcctgctgaggtagttaccttt
atttcccatgcaacacaaaaccgattgagaacagtgatagaaaaagtaacaatggtaaca
cagcaccgaatggaatcgcacaaagacgatgaatggtatgaacaggctacagatgttcga
tcacagctgaagttttttgaacagttggagcgtttagaaaagcaaagaaaagatgaacaa
gagagggaaattttgttaaaggcagccaagagtcgctcaaggcaagaagacccagagcaa
gctagattgaaacaaaaagcaaaggagatgcagcaacaagaactagcacagatgaggcag
agggatgccaacctaactgcattggcagctattggtccacggaagaaacagaagcttgat
tcacctggcttacttaccattggaggagaggctttgggcatgaccagtggaggtcaggct
ggttttgggtctccttcatccagacagtatgcacgacagaaaataactcgagtaaacctc
agggacttcatcttttacatggaacaggaaagagaaactagccattctctcctgctctac
agagctttgcttaaataa
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integrated database retrieval system
