Caretta caretta (Loggerhead turtle): 125621005
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Entry
125621005 CDS
T09292
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03013
Nucleocytoplasmic transport
ccay03015
mRNA surveillance pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125621005 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
125621005 (DDX39B)
03015 mRNA surveillance pathway
125621005 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125621005 (DDX39B)
03041 Spliceosome [BR:
ccay03041
]
125621005 (DDX39B)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125621005 (DDX39B)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125621005 (DDX39B)
Spliceosome [BR:
ccay03041
]
Complex C
Other components
EJC/TREX
125621005 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125621005 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125621005
NCBI-ProteinID:
XP_048673293
LinkDB
All DBs
Position
13:1330059..1339436
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AA seq
517 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAGGDGVDVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDVITPFYLLCPPRRPRPRGGARAAAPGPAPSTGPQSFRKITRVTLASAPPRRGKQG
APSSRPPPRPPFLPSAASTRHRSLRISWPHTPRQPMEIFVDDETKLTLHGLQQYYVKLKD
NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ
QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV
SDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggataacgagctgctggattacgaggatgacgaggtggagaac
caggcggggggcgacggggtggacgtgccccccaagaaggacgtcaagggctcctacgtc
tccatccacagctccggcttccgggactttctgctgaaacccgagctcctccgcgccatc
gtcgactgcggcttcgagcacccctcggaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtcttcgtg
ctggccacgctgcagcagctggagcccgtcacggggcaggtgtctgtgctggtgatgtgc
cacacgcgggagctggcgttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagtgtcaaggtggcggtgtttttcgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacatcgtggtggggacgccaggccggatcctggccctggcc
cgcaacaagagcctcaacctcaaacacatcaagcatttcatcctggacgagtgcgacaag
atgctggagcagctcgatatgcgccgggacgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgtttagcgccaccctgagcaaggaaatccgccccgtctgccgc
aaattcatgcaagacgtaattacccccttctaccttctttgccccccccggcgcccccgc
ccccggggcggcgcacgggccgcagcgccaggaccggcccctagcacaggcccccagagc
ttccggaagatcactcgggttacgctagcttcggcacccccccggcgcggaaaacagggc
gccccctcttcccgccctcccccccgcccccccttccttcccagcgcggcatccacccgg
caccgcagcctccggatcagctggccccatacacccaggcaacccatggagatcttcgtg
gacgacgagaccaagctgacgctgcacggcctgcagcagtattacgtcaagctgaaggac
aacgagaagaaccgcaagctcttcgacctgctcgacgtgctggagttcaaccaggtggtg
atcttcgtcaagtcggtgcagcgctgcatcgccctggcccagctgctggtggagcagaac
ttcccggccatcgccatccaccggggcatgccccaggaggagaggctgtcccgctaccag
cagttcaaggatttccagcgccggatcctggtggccaccaacctctttgggcgggggatg
gacatcgagcgggtcaacatcgccttcaactacgacatgcccgaggactcggacacctac
ctgcaccgggtggcgcgggctgggcggttcggcaccaagggcctggccatcaccttcgtg
tcggacgagaacgacgccaagatcctcaacgacgtgcaggatcgcttcgaggtgaacatc
agcgagctccccgacgagatcgacatctcctcctacatcgaacagactcgataa
DBGET
integrated database retrieval system
