Caretta caretta (Loggerhead turtle): 125621087
Help
Entry
125621087 CDS
T09292
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125621087 (HELZ)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
125621087 (HELZ)
3'-5' decay
Other 3'-5' decay factors
125621087 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
AAA_22
zf-CCCH_4
Mov-10_helical
AAA_16
AAA_7
Bac_DnaA
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
125621087
NCBI-ProteinID:
XP_048673505
LinkDB
All DBs
Position
13:30037474..30190004
Genome browser
AA seq
1942 aa
AA seq
DB search
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSQYPPAHFPEACQAEINRIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSKVLSKSLM
GESLNGMVTKDLTRLKMLLAETAAAASKVPSGYHGEDLEDGSQDGWQFRPPPRGVTSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLI
EKWMNSLSPEKVLSECVEGVRVEHNPELSVTVTTKKSQQTWTFALTCKPARMLYRVALLY
DAHRPHFNIVAISAGDSTTQVSQEVPENCQEWIGGKMAQNGIDHYIYKVSIAFNTEIFGT
FRQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVDFEPNE
TTELEKSLLIRYQIPLSADQLFTQSVLDKSLTKINYQSRLHDLLYIEEIAQYKEVSKFNI
KVQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVT
KEKSVQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPL
CEMHYALDRIKDNSILFPDVRMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILRQRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSDLFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEIVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRQQHSANINKQQQSPPKGKGHHHNQND
HFQTDGIVQPNPSVLIGNPIRAYTPPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPA
VYGGNMVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHHS
PVSIGQQQLQHQEKEQHEQNRNGKTENSAGPEINKIRTPEKKPVESKQVDVEGNSQNRSP
ESRSSVGYPNSKLHRKDNLNPRQLNLHLTPPHTQYAVPSRHYQHLSQIPRQPYPVQQQQN
LLSQQQNHLPEQQNQIPPQQSQIVQQHNHVNQQPPQPSQLSPAYQMGPSQSFFNNPIPHR
PHSPAVDAVISEHHPPPMLQEVNNPLRPIAQHNPMLPSHLNNFIEENPAGMPIGETLDRM
HGNVALETLRQQQQARLQQWNEHNAYLSQGNIPYPHHHHPHLQHLPQQPIGLHQQPVRAN
WKLASNTEDETEATYSRFQDLLRELSHRDQSESRDLAEMPPPQSRLLQYRQVQPRSPPAL
PSPSCNSNHSGHFPNFTENNRDIEIANNPAFQQHLPQIYNPPFSLPSEHITPPPLKYLQP
DGSWTYANLQQNHLMGQGFHYGIPPLPHRSQQNPFIQIQNHQHAVGQEPFHPLTSRAVSA
SSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEDFNTPQDNLGQCKELQDHSNQSSFNYS
SPELWVNSTSSAPYQNIPCNGSNRAVPPRELLAPPKTVKPPEDHLKAENIPLSNSFNYNM
LQHLGQFPPLMPNKQIIESNSNSQQNAGGNKPAMSYASALRAPPKPKPPPEQAKKNSDPL
SLFQELSLGSSSGSNGFYSYFK
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatcacttaaacagcag
gattatgaagtggctgtgaagcactgcacggaggcactcctttccctcagccagtacccc
ccagctcacttcccggaagcatgccaggctgaaatcaaccgcataaaaattgagagtctt
ctctatagaattgcttcttttttacaacttaaaaactatggacaagcagatgaagactgt
aggcatgtgctgggagagggactggccaagggagatggctctttccgtgcagtgctttgc
tgcatgcatcttaaagggaagctacaaattgtgtctaaggttctttccaaatcactgatg
ggcgaatcattgaacgggatggtaactaaagatttgacaagactaaaaatgctgcttgct
gaaacagcggcagcagctagcaaagtaccctcaggataccatggggaggatttggaagat
ggatctcaggatggttggcaattccgccccccacccaggggcgtcacaagtagtgaggag
tacacattgtgtaagagatttttagagcaagggatctgcaggtatggtgcacagtgtact
tcagcacattcccaggaagagctaacagaatggcaaaaacgatatgcttcccgcttgata
agattaaaacaacagaaggaaaacaaacaatgttcgggtagttatatggaaaccttgatt
gagaaatggatgaattcattatctcctgagaaagtgcttagtgaatgtgtagaaggagtg
agagtagagcataatcctgaactatcggttactgtcaccaccaaaaagtctcaacaaacg
tggacatttgctctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttat
gatgcccatcgtcctcatttcaatatcgttgcaatatctgctggagacagcactacccag
gtatcacaagaagtcccagaaaactgtcaggaatggataggaggaaagatggcccaaaat
ggaatagatcactacatatacaaagtcagtattgcctttaacacggaaatctttggaaca
tttcgccaaaccgtagtgtttgattttgggttggaaccagtactcatgcaacgagtaatg
attgatgctgcttcaacagaagatcttgaatacctgatgcatgcacggcaacagttacta
actacagctaagcgttgggattctacttctaagactattgtagattttgagcctaatgaa
actactgaattggagaagagccttcttatcagataccaaattcctctatctgctgaccag
ctgtttacacagtctgtcctggacaaatcattgaccaagatcaactatcagtctcggttg
catgacctcctttatattgaggaaatagcacagtataaggaagtcagcaagttcaacata
aaagtgcaattgcagatagtagcaagcttcatgctcactggtgtttccggaggtgcaaag
tatgcccaaaacggacaactttttggccgctttaagctcactgaaacgctttctgaagac
actttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgccagtcact
aaagagaagtcagtacagacccaaggaaccaaagagaaggtttatgaagcagctattgaa
gagaaaacaaaggattatatcttcttgagggtatccagggaatgctgtgaagaacttaat
cttcgagcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttacccctc
tgtgaaatgcattatgccttggacaggatcaaagacaacagtattttgtttccagatgtc
cgcatgactcccaccataccctggagccccaacagacaatgggatgagcagttggaccct
cgactaaatgcaaagcagaaagaggctgttctggctatcactactccactttcgatacaa
ctgcctcctgttcttatcatcggtccctatgggacaggcaaaacgttcactctggctcag
gcagtcaagcacatactccaacagcaggatactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcgagacctctcagggtatatttcagaaatcgctgggtaaagactgtccaccca
gttgtgcatcaatactgtttgatttcaagcacacattccacctttcagatgccacagaaa
gaagatattcttagacaacgagtagtagttgttactttgaatacttcacagtatctatgt
caactggatcttgaacctgggttttttacgcatattctattagatgaagctgcgcaggcc
atggagtgtgagacgatcatgcctctagcattagctaataaaaacacaagaatcgtcttg
gctggagaccatatgcaactcagtccttttgtctacagcgaatttgccagggagagaaat
cttcatgtttcgttacttgatcggctctatgagcactaccctgcagagtttccatgcagg
atcttgctgtgtgagaactatcgctcccatgaagctatcatcaattacacatctgacctt
ttctatgagggcaaattgatggcaagtggaaagcagccagcacacaaagatttctaccct
ttgactttcttcacagcacgcggagaagatgtgcaggagaaaaacagtacagctttctac
aacaatgcagaggtatttgaaatagtagaacgtgttgaagaattgagaagaaaatggccg
gtagcttggggaaaattggatgatggcagtataggggttgtaacaccatatgctgatcaa
gtgttccgaattcgggcagaacttcgaaaaaagagattatctgatgtcagtgtagaaaga
gtgctaaatgttcagggaaagcagtttagagttttgtttctcagcacagtgcgaacacgg
catacgtgcaaacacaagcaaacaccgatcaaaaggaaggaacaattactggaggattca
acagaggacttggattatggttttctgtccaattacaaacttctcaacactgccattaca
agagcacagtccctggtagctgtggtgggagacccaattgctttatgttccattggaaga
tgcaggaaattttgggagaggtttattgccctgtgtcacgagaatgagagcctccatggt
atcacgtttgaacagatcaaggctcagttggaggctttggagttaaagaaaacctatgtg
ttgaatccactggcacccgagtttatccctcgggctctgcgacagcagcattctgcaaat
atcaacaaacagcaacaatcaccacccaagggcaagggtcatcatcataatcagaatgac
cattttcaaactgatggaattgttcagcccaatccttctgtcctaattggaaatcctatc
agagcgtatactcctcctcctcctcctcctcttggacctcaccccaacctggggaaatct
ccaagccctgttcaaaggatagatcctcacactgggacaagtattctttatgtacctgct
gtctatggaggaaatatggtcatgtctgtgcctttgcctgtaccgtggacagggtatcag
ggtaggtttgcagttgaccctcgaatcattacacaccaagcagctatggcgtataatatg
aacctgttacaggcgcatgggcgtgggtctcctataccttatggcctgggacatcattca
ccagttagtatagggcagcagcaacttcaacatcaagaaaaggagcaacatgaacaaaat
cgaaatggtaaaaccgaaaacagtgctggacctgaaattaataaaattcggacacctgag
aaaaaacctgtggaatccaaacaggttgacgtagaaggaaattcccaaaatagaagccca
gagtcacgttccagcgttggttatccgaattctaaacttcatcgcaaagataatctcaac
cctaggcagctgaatctacatctcacccctccccatacacagtatgcagtccccagtcgc
cactaccagcacctgtcccagatccccaggcagccataccctgtgcaacagcagcaaaat
cttttaagtcagcaacaaaatcatttgcctgaacagcaaaaccaaataccaccccagcag
agccagatagtccagcagcataatcatgtaaatcagcagcctccacaaccttcacaactt
tcccccgcttaccagatgggccccagccagtctttttttaataacccaattccccaccga
ccacattctcctgcagtagatgctgtgatttcagaacatcatcccccacccatgttgcaa
gaagtcaataaccctctgagacctattgcacagcacaacccaatgctaccatctcacttg
aacaacttcattgaagagaatcctgcaggaatgcccataggggagacattagatcgtatg
catggaaatgtagctttggaaacattaaggcagcagcagcaagcaaggttacagcaatgg
aatgagcataatgcctatctcagtcagggcaatattccatatccacaccatcaccatcct
cacctacaacatcttccccagcaaccaattggattgcaccaacagccagttagggcaaac
tggaaacttgcgagtaatacagaagatgaaacagaggcaacatattcaaggttccaggac
ttgctcagagaactgtcacaccgcgatcaaagtgaaagcagggacctagctgaaatgcca
cctccccagtccagactgttgcaatacagacaagttcagcccagaagcccaccagcgctc
ccttctccttcatgcaactcaaaccacagcggccactttcccaacttcactgaaaacaac
agagacattgaaatagccaacaacccagcatttcagcagcatttgccccaaatatacaat
cccccgttctcactgccatctgaacacataaccccacctcctttgaagtacctgcaacct
gatggatcatggacctatgctaacctacagcagaatcacctaatggggcagggctttcat
tatggtatacctccgttgccccatagatcacaacagaacccttttatacaaatacagaat
catcagcatgcagttggtcaggagccatttcatccgctcacatctcgagcagtatctgct
tcttcgctccacagcttagaagagtatgaaccaagaggaccaggcaggccgttgtaccaa
agaagaatttcctctagttcagtccaggcttgttctgaagattttaacactcctcaagac
aatcttggtcagtgtaaagagcttcaggaccatagtaaccagtcttctttcaactattca
tcccctgagttgtgggtaaactccacctcatctgccccatatcagaacattccatgcaac
ggatccaacagagcagtaccacccagagaactgttagctccaccgaagacagtcaaaccc
ccagaggatcacctgaaagccgaaaacataccgctgtccaattccttcaactataacatg
ctgcagcatctcggccagttcccacccctcatgcccaacaagcagatcatcgaatcaaac
agcaacagccagcagaatgctggggggaacaagcctgccatgtcctacgcaagtgctctg
cgggctccgccaaagcccaaacctcctcctgagcaggcaaaaaagaatagtgaccctttg
tctttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttactcctat
tttaaataa
DBGET
integrated database retrieval system
