Caretta caretta (Loggerhead turtle): 125621224
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Entry
125621224 CDS
T09292
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125621224 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125621224 (DDX5)
03009 Ribosome biogenesis [BR:
ccay03009
]
125621224 (DDX5)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125621224 (DDX5)
Spliceosome [BR:
ccay03041
]
Complex A
U1 snRNP components
U1 related factors
125621224 (DDX5)
Complex B
125621224 (DDX5)
Ribosome biogenesis [BR:
ccay03009
]
Eukaryotic type
Pre-60S particles
Helicases
125621224 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
125621224
NCBI-ProteinID:
XP_048673841
EnsemblRapid:
ENSCECG00000001274
LinkDB
All DBs
Position
13:complement(29466574..29474624)
Genome browser
AA seq
602 aa
AA seq
DB search
MPGYDMDRGFGGPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPDVV
RRTVQEVEQYRASKEVTVKGHNCPKPLINFYEANFPANVMEVIQAQNFTEPTAIQAQGWP
VALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV
AAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLV
LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALE
LSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGW
PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI
HRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLIEDRGSGRSRGD
RRDRYSAGKRGGFGSFRERENFERTYGAVGKRDFGAKAQNGGYSAQTYSNGTPFGNGFAA
AGMQAGFRAAGNPAGAYQNGYDQQYATNIATMHNGMNQQQYAYPATGAAPMIGYPMPAGY
TQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtacgacatggacagaggttttggtggtcctcgctttggaggaagcagaggt
ggacctttatctggaaagaaatttggaaaccctggagaaaaacttacaaaaaagaaatgg
aacctagatgaactgcccaaatttgagaagaacttttatcaagagcatcctgatgtagtt
agacgcactgtgcaagaggttgaacagtacagagcaagcaaagaagttacagtgaagggc
cataactgtccaaaaccacttataaatttctatgaggctaactttcctgcaaatgttatg
gaagtaattcaggcacagaatttcactgaaccaactgctattcaggcacaaggatggcct
gttgctttgagtgggctggatatggttggagtagcacagactggatcaggaaaaacactg
tcttacttgttgcctgccatagtgcatataaaccatcagccattcctagagcgaggagat
ggacctatttgtctggtgctggcaccaactcgagaactggctcaacaagtgcagcaagtg
gccgctgaatatagcagagcatgtcgtttgaagtctacttgtatttatggaggcgctcca
aagggaccacaaattcgagatttagaaagaggtgtggaaatctgcattgcaacacctgga
agactcatagactttttagaagctggaaagaccaatctcaggagatgtacttaccttgtg
cttgatgaagctgacagaatgcttgacatgggatttgaacctcagatcagaaaaattgta
gatcagataaggcctgacaggcaaactctaatgtggagtgcaacatggcccaaagaagtt
agacaacttgctgaagatttcttgaaagaatatgtacacatcaacattggggcattggaa
ctaagtgcaaaccacaacattcttcaaattgtggatgtatgtcacgatgtggagaaggat
gacaaacttattcggttgatggaagaaattatgagtgagaaagaaaacaaaaccattgtg
tttgtggaaaccaaaagacgatgtgatgatcttacaagaaaaatgagaagagatgggtgg
ccagcaatgggtatccacggtgacaaaagccagcaggagcgagactgggttctaaatgaa
ttcaaacatggaaaagctcccatcctgattgctacagatgttgcatccagaggtctagat
gtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggactatatc
caccgaattggacgaactgcccgcagtaccaaaacaggcacagcctacacattctttact
cctaacaatataaagcaagtaagcgacctcatctctgtgcttcgggaggctaatcaagct
atcaaccccaaattgcttcagttgattgaagacagaggttcaggtcgttcccgaggtgat
cgacgtgaccgatattctgcgggcaaaaggggtggatttggtagttttagagagagagag
aattttgagagaacttacggtgcagtaggaaagagagacttcggagcaaaagcccaaaac
ggtggctacagtgctcaaacctacagtaatggaactccatttggaaatggctttgcagct
gctggcatgcaggctggcttcagagctgctggtaatcccgcaggagcttaccagaatggt
tatgatcaacagtatgcaactaacattgcgactatgcacaatggtatgaaccaacagcag
tatgcctatcctgccactggtgctgctcctatgataggttacccaatgccagcaggttat
actcaataa
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integrated database retrieval system
