Caretta caretta (Loggerhead turtle): 125621335
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Entry
125621335 CDS
T09292
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03018
RNA degradation
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125621335 (LSM2)
09123 Folding, sorting and degradation
03018 RNA degradation
125621335 (LSM2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125621335 (LSM2)
03041 Spliceosome [BR:
ccay03041
]
125621335 (LSM2)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125621335 (LSM2)
mRNA degradation factors
5'-3' decay
Lsm complex
125621335 (LSM2)
Spliceosome [BR:
ccay03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125621335 (LSM2)
Complex C
U2 snRNP components
125621335 (LSM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
125621335
NCBI-ProteinID:
XP_048674083
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All DBs
Position
13:complement(1969443..1972752)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctattcgttcttcaaatccctggtggggaaggacgtggtggtggagttgaaa
aacgatctgagtatctgtgggaccctccattctgtggatcagtacttgaacatcaagctg
accgacatcagcgtgacggatccggagaagtacccccacatgctgtcggtgaagaactgc
tttatccggggctccgtggtgcgctacgtgcagctgccggcagacgaggtggacacgcag
ctgctccaggatgccgcacgcaaggaggcgctgcagcagaagcagtga
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