KEGG   Caretta caretta (Loggerhead turtle): 125622427
Entry
125622427         CDS       T09292                                 
Symbol
RAE1
Name
(RefSeq) mRNA export factor RAE1
  KO
K14298  mRNA export factor
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    125622427 (RAE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccay03019]
    125622427 (RAE1)
   03036 Chromosome and associated proteins [BR:ccay03036]
    125622427 (RAE1)
Messenger RNA biogenesis [BR:ccay03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     125622427 (RAE1)
Chromosome and associated proteins [BR:ccay03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    125622427 (RAE1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_EML_2 WD40 WDR55 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_IFT140_1st eIF2A Beta-prop_ACSF4 Beta-prop_RSE1_2nd NBCH_WD40 Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_SPT8
Other DBs
NCBI-GeneID: 125622427
NCBI-ProteinID: XP_048676477
LinkDB
Position
14:complement(11094708..11107832)
AA seq 420 aa
MRGGKRPVPARPCVSRWCRAAASLAFVPPCPPPEARSSPHAPSGAHPALGAKMSLFGSTS
GFGAGGTSMFGNTATDNHNPMKDIEVTSPPDDSIGCLAFSPLALPGNFLIAGSWANDVRC
WEVQDNGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEA
PVKTVHWIKAPNYSCVMTGSWDKTLKFWDTRSPTPMMTLQLPERCYCADVVHPMAVVATA
ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKVNKPTGFALGSIEGRVAIHYINPP
NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPAHGTLATVGSDGRFSFWDKDARTKL
KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRNKK
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcgcggtgggaagcggcctgttccggctcggccgtgtgtgagccggtggtgccgcgcc
gctgcctccctcgctttcgtcccgccctgccccccgcccgaagcgcgctcctcgcctcac
gctccctcaggagctcacccggctcttggggccaagatgagtttgtttggatcaacctca
gggtttggagctggtggtaccagcatgtttggaaatacagcaacagataatcacaacccc
atgaaggatattgaagttacatctccacctgatgacagcattggttgtttagctttcagt
cccctagcattgccgggtaacttccttattgcaggatcctgggcaaatgatgttcgctgt
tgggaagttcaagataatggacagacaattccgaaagctcagcagatgcacacagggcct
gtgctagatgtgtgttggagtgatgatgggagtaaagtatttactgcctcttgtgataaa
accgctaaaatgtgggatctcaacagtaaccaggccatacaaattgcacagcatgaagcc
cccgttaagactgtccattggattaaagcaccaaactatagctgtgtgatgacaggaagt
tgggataaaactttgaagttctgggatacacgatcaccaactcctatgatgacattacag
ctgcctgaaagatgctactgtgctgatgtggtgcatcccatggcagttgtcgcaactgcg
gaaaggggtttgatagtataccagttggagaatcagccttctgaatttagaagaatagaa
tctccactgaaacaccagcatcgctgtgttgctatttttaaagacaaagtgaacaaacct
actggatttgcccttggaagtatagaaggaagggtagcgattcactatatcaacccacca
aatccagccaaagataacttcacttttaaatgtcatcgctccaatggaacaaacacatct
gcacctcaggatatctatgctgtaaatgggatagcatttcatcctgcccatggcaccctt
gcaactgtaggatctgatggtagattcagcttttgggataaagatgcacgaacaaagcta
aaaacatcagaacagcttgaccagccgatatctgcttgttgttttaaccataatgggaat
atttttgcatatgcttccagttacgactggtccaagggccacgaattttataatccacaa
aagaaaaactacatttttctgcgtaatgcagcagaagagttaaagcccaggaataagaag
taa

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