Caretta caretta (Loggerhead turtle): 125622655
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Entry
125622655 CDS
T09292
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
125622655
NCBI-ProteinID:
XP_048676745
LinkDB
All DBs
Position
14:complement(6369060..6464931)
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AA seq
1471 aa
AA seq
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MLCHRSFLFACITLASHVTGHVHGQGPNRLKLTVLSEDRLQMKWKETEGTISGYKVQVKP
MAGDLEQEVMLKTKTPKATVGGLSPTKEYTLQIYVLNGSQEALFAKRKFVIQELKNISQA
RNTRRNTATSPGKSITPLRNTATEHIPVAKTTSPAPSEASTQTAKDRPEKRRQKAAVSKD
SSETLGRKPNTKFSVTETPTTLKTTLRSPTKSERGDLGQEKHTKGTIKRGPQFQCDTSAT
TDIVLLVDGSWSIGRSNFKLVREFLSTLVSPFNIARDKIRIGLSQYSSDPRTEWNLNTYV
TRDEVLEAVRNLRYKGGNTFTGLALSYVLEQNLKPEAGARSDAVKLVILLTDGKSQDDAN
LSAQTLKNMGIEIFAIGVKNADEAELRQVASEPLELTVYNVLDFPLLSSLVSRLSRVLCT
RIKEKHKSENTDSPVKAVSANTGPHLSPTNLIISEVTSRSMHLSWTPPLRPPKKYRIVYY
PSRGGIPKEVVLDGSTSSTQLVNLTSHTEYLVSVFPIYENAVGDGLRGITSTSLSPPLSL
RALEVSHNSLTLSWQPSSGATQYLVLCSAAPNGAENDTKEVKVEQPEVLLDGLSPSTEYS
VAVYAMYGEEASDPASIQETTLALSPPRHLSFSEIGHGAVKVSWDAASRAVRAHRVTYIS
SRGSNAGEVEVPSSASSTVLRPLSSLTQYFISVSSIYSEGESFPLTGNVTTLKVPPPGDL
KVTELSGNNVRLQWEAAAASDVLVYQIKWNALGEESSQELSVAGNLAAASLPGLKKNTEY
QISIWAYYKDGARSDTVSILHRTTSQSPPTDLVIDSETPNSLQVHWRPPGSHIQYYRVTY
TPESDDSAQQTVMVSGKSSGVTLQSLLPNTAYKVMVSAVHDAGESDAVSTTGQTASVLAK
LPSTQGSVPFKTEACPTISSTEGSLQGFDMMEAFGLVERKYASIKGVAMEPYVFSGTRTY
TLFRDIQLTQRTSEVLLSGIPSVHTISILLRLLPETPKVPFAVWQLTDEDFQPILGVILD
SSKKSLTYFNHDYKADLQEVTFDQQEVKKIFYGSFHKVHIAVSHFRIRLYLDCKKIAEKP
INAMGSISTAGFIMLGKLTGTRGPRSGSAAFQLQSLQIVCSGSWAEEDRCCDLPALRNEE
TCPALTPSCTCTPGIPGPPGPPGFPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPSGQ
QGSLGSQGITVQGPVGPPGIKGDKGDTGIPGMQGIPGAQGAPGRDGIQGAKGVRGLEGTA
GPPGPPGPRGFQGITGARGSSGERGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQ
ACEQMIQTHVLKFDSFIHEHTRKPVPVWDNTLKPGGPGPPGLPGIAGTRGERGEDGIPGQ
PGKDGYPGERGPGPKGEKGMAGAREEGVQGPRGRAGPPGEQAIGESGLKGSPGSTGPPGF
PGARGNPGAPGYPGGCANSGCYRASTRDFIP
NT seq
4416 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgtcaccgttccttcttgtttgcctgcataaccttggcgagccatgtcacagga
cacgtgcatggtcaagggccaaaccggttgaaactaaccgtcctctcggaagaccggcta
cagatgaaatggaaagaaacagaagggaccatcagcgggtacaaggttcaagtgaagccc
atggcaggtgacctggaacaggaagtcatgctgaaaaccaaaacgcctaaggcaacagtg
ggaggactaagccccacgaaggaatacaccctgcaaatctacgtgctcaatggctcccaa
gaagccctgtttgctaaaaggaaatttgtgattcaggagctgaaaaacatctcgcaggct
agaaatacccgaaggaacacagcaacctccccaggaaagagcatcacccctttgagaaat
acagcaaccgagcacattccagtggctaagacaacgtcaccggctccgagtgaagcctca
acacagacagcaaaagacagacctgaaaagagaagacagaaggcagcagtatccaaggac
tcaagtgaaaccctcggaaggaaaccaaacaccaagttcagtgtgacagaaacaccaaca
acgctgaaaacaactctgcgcagtcccacaaaatctgagcgaggagatctaggccaagaa
aaacacacaaagggaactataaagagaggtcctcagtttcagtgtgacacatctgccaca
actgatattgtcctgctggtggatgggtcttggagtattggacgcagcaacttcaagctt
gtcagggagttcctgagcaccttggtttcacctttcaatattgcccgggataagataagg
ataggtttgtcccagtacagcagtgatccacggacagagtggaacctgaacacctacgtc
acaagggacgaggtgttagaggcggtgaggaacctgcgatataaaggcggcaacactttc
acaggccttgctttgtcctatgtcctagaacaaaatctgaaacctgaagctggtgccagg
tcagatgcagtcaagctggtgatcctcttgactgatggaaaatcacaggatgatgccaac
ctgtctgcccagaccttgaaaaatatgggcatagagatatttgccattggggtgaaaaat
gcagatgaggcagagctgagacaggtggcatcagagcccctggagctcactgtttataac
gtgctggatttccccctgctcagctctctggtcagcaggctcagccgggtcttgtgcacc
aggatcaaagagaagcacaagagtgaaaacacagacagtcctgtgaaagctgtctcagcc
aacactggtccccatctgagtcccaccaaccttataatatcagaggtgacctccagaagc
atgcacctttcctggactcctccgctgagaccaccaaagaaatataggattgtatattac
ccatccaggggaggaatccccaaagaggtagttttagacggatctacctcctccactcag
cttgtcaatttgacctcgcacacagaatacctggtttcggtgtttcctatttatgaaaat
gccgttggagatgggctgaggggcatcacctcgacatctttgtcaccacccctttccctg
cgcgcattggaagtgagccacaacagtctaacactgagctggcagccgtcaagtggagct
actcaatacctggtgctctgttcagcggcccccaatggagcggagaatgataccaaagag
gtgaaagtggaacagcctgaggttctgctggacgggctgtctcccagcacggagtactcc
gtagcagtgtatgcaatgtacggggaagaggcaagtgatccagccagcatccaggaaacc
accttggcactgagccctcctagacacctaagtttctctgagatcggccatggggctgtc
aaggtcagctgggacgcggcttcgcgtgctgtgagagctcaccgtgtgacctacatctca
agcagagggagcaatgccggggaggtcgaagttcccagcagtgcatcatccactgtgctg
agacctctgtcctctctcacccagtacttcattagtgtcagctccatttatagtgaaggc
gaatcctttccgcttacaggcaatgttaccacattaaaggttccaccaccaggtgacctg
aaggtgactgaactctcaggaaacaatgtccgattgcagtgggaagcagccgctgcctct
gatgtcctggtttatcagattaaatggaatgcacttggagaagagagctcccaggagctg
tctgttgctgggaacctggctgctgccagcttaccaggattgaaaaagaacacagaatac
cagatatcgatctgggcatattacaaggatggagctcgaagtgacactgtctctattctg
cacagaactacttcccagagcccacccaccgacctcgttatagactcggagacccccaat
agcctgcaggtccactggagaccccctggcagccacatacaatactaccgagtaacctac
actcctgaatctgatgacagtgctcagcaaacagtaatggtttctggtaaaagcagtgga
gtgaccctgcagtcgctgcttcccaacacagcatacaaggtgatggtttctgctgtccat
gacgcaggagagagtgatgctgtgtcaacaactggccaaactgcttctgtcttggctaaa
ctgccctcaacacaaggctccgttcccttcaaaacagaggcttgccccactatcagttcc
actgaaggctctctacaaggatttgacatgatggaggcttttggactggtggaaagaaaa
tatgcctccattaaaggagtggccatggaaccgtatgtgttcagcgggacccgtacttac
actctcttcagagatattcagctaacccagagaacaagtgaagtgcttctctctgggatt
ccgtctgtgcacaccatcagcatcctcctccggctccttccggagactcccaaagtgccc
tttgccgtgtggcagctaacagatgaggacttccagccaatcctcggggttatacttgac
tccagtaagaaatccttgacctatttcaatcatgactacaaggctgatttacaggaagtc
acctttgaccaacaggaagtgaagaagatattctatgggagctttcataaggtgcacata
gctgtgagccatttcaggatcagactctacttggactgtaagaaaatagcagagaaaccg
atcaatgctatgggaagcatctccactgctggcttcatcatgctaggaaaactgacagga
accagaggacccaggagtgggtcagcagcattccagctgcagtctttacagatagtttgc
agtggctcatgggcagaggaagatagatgttgtgatctcccggcactgagaaatgaagag
acctgccctgccttaactccttcctgcacctgcactccaggtatcccaggcccgccaggt
cctccagggttccctggcagtcctgggagaagaggaccacaaggggaacaaggggaacca
gggccgaagggtgagccaggtcctcctggacaagtcggaccagagggtcctagtggacaa
caagggtcactaggctcccaaggaatcaccgtgcagggcccagtgggaccaccaggaatt
aaaggggataaaggagacactggaatcccaggcatgcagggtattcctggtgcccaggga
gccccaggcagagacggcattcagggtgcaaagggggtgagaggactggaaggcacagca
gggcctccggggccaccaggacccaggggtttccaaggaataacaggtgcccgaggcagt
agcggagagcgaggacctccaggtgatgttggacccacaggtctgcctggtccaaagggg
gaaaggggagagaaaggtgaaccacaatccctggccaccatttaccagctggttagtcag
gcttgtgagcagatgattcagactcatgtgttgaaattcgactcattcatccacgaacat
acaaggaagccagttcctgtgtgggataacacattgaagccaggaggacctggaccacca
ggtcttccgggtatcgctggtaccagaggagaaagaggagaagacggtatcccaggacag
ccaggcaaagatgggtatcctggggaaagaggaccaggacccaagggtgagaaagggatg
gctggagccagggaggaaggagtccagggaccaagaggacgagcaggccctccaggagaa
caagccataggggagtcaggtctgaagggttcccccgggagcaccggtcctccaggtttt
cctggtgctagaggcaatcctggggcacctggctacccaggtggttgtgctaactctgga
tgctacagggcaagcacaagagatttcatcccctga
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integrated database retrieval system