Caretta caretta (Loggerhead turtle): 125622669
Help
Entry
125622669 CDS
T09292
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
ccay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125622669 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
125622669 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125622669 (PABPC1L)
03041 Spliceosome [BR:
ccay03041
]
125622669 (PABPC1L)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125622669 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
125622669 (PABPC1L)
Spliceosome [BR:
ccay03041
]
Complex C
Other components
Complex C specific factors
125622669 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_occluded
RBD_DEAH11
RRM_5
RBD_RDR6
RRM_3
RRM_RdRP1_2
DUF6262
UPF0524
Motif
Other DBs
NCBI-GeneID:
125622669
NCBI-ProteinID:
XP_048676805
LinkDB
All DBs
Position
14:18815384..18852115
Genome browser
AA seq
415 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHTDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAANRAIDTMNGMLLNDRKVFVGHFKSRRERE
AEFGARAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVRVMMDDTGRSKGFGFVNFEK
HEEAQKAVADMNGKQINGRMVYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQAPTGYFLPAIPQPT
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagtggccctggatatccattagcttctttgtatgtgggagatcttcacaca
gatgtgaccgaagccatgctgtatgagaagttctcacctgctggaccgatcatgtccatc
agagtttgtcgggatgttgccacgcgtcgatcgctcggttatgcctacataaattttcag
cagcctgctgatgctgagagggccttggacaccatgaattttgaagtgatcaaaggtcgg
cccattcgaatcatgtggtcccagcgagatcctggcctcaggaaatcaggggttggaaat
gtctttatcaagaatctggatgactccattgacaacaaagccttgtacgatacattctca
gcctttgggaatatcctttcttgcaaggtggtttgtgatgagaacggatcccgcggttat
ggctttgttcactttgagacccatgaggccgcaaatcgggccattgacaccatgaacggg
atgctgctcaatgaccgcaaggtctttgttggccattttaaatcccgcagagagcgggag
gcagaatttggggcacgagcgatggaattcaccaatgtctatatcaagaactttggggat
gatatggatgatgacagactgcgggaaatattctccaagtttggaaagacgctgagcgtc
agagttatgatggacgataccggtcgctcgaaagggttcgggtttgtcaactttgagaag
cacgaagaagcccagaaggctgtggcagacatgaatgggaagcagatcaatggccggatg
gtgtacgttggccgagctcagaagaggatggagcgtcagagtgaactgaagcgtaaattt
gaacagatcaaacaggaaagagtgagcagataccagggagtgaatttatatgtgaagaac
ctggatgatggtattgatgatgagcggctgaggaaggagttctctccatatggtaccatt
actagtgcaaaggtgatgacagagggtggacacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacggaaatgaacggacggatcgtcagcacc
aagcctttgtacgtcgccctcgctcaaagaaaggaggaaagaaaagcgattctcaccaac
cagtatatgcagagactggccaccatgagggccctgcctggccctctccttggctccttc
caggcgcccacagggtacttcttgcctgccatcccacagccaacatag
DBGET
integrated database retrieval system
