Caretta caretta (Loggerhead turtle): 125622819
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Entry
125622819 CDS
T09292
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03013
Nucleocytoplasmic transport
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125622819 (THOC5)
09122 Translation
03013 Nucleocytoplasmic transport
125622819 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125622819 (THOC5)
03041 Spliceosome [BR:
ccay03041
]
125622819 (THOC5)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125622819 (THOC5)
Spliceosome [BR:
ccay03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125622819 (THOC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
125622819
NCBI-ProteinID:
XP_048677224
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All DBs
Position
15
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AA seq
683 aa
AA seq
DB search
MSSDSSKKRKPKVIRTDGAPQESKRSRADPDQDVKYYSEEAEVELRDPNKDYELYKQTCQ
ELQRLMAEIQDLKSKGSKDSAVAIEERRIQSCMHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSVDEFYKEAPPEISKPDITL
NEPHQQTLARLDWELEQRKRLAEKYKECLANKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQANAYGQACDKKLAVAIEGSVEEAKAL
YKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVTIDLKCKDDSVL
HLIFFYLINLNVMTVKTKVTTATEMTTPISAGDLLSPGSLLNCLYPGDHGRRTPNPANQF
QFDKVGILTLSDYVTDLGHPYMWVQKLGGLHFPKDQPQHTVTADNSLSASHMEMTMKLLR
TRLQSRLALHKQFASLEHGIVPVSSECQHLFPSKVVSRLVKWAALPYEDYLELSYTKDVV
EAGLAEDTHLYYMALVERGTAKLQAAVVLNPGYSSMPPIFNLCLNWKGEKTNSNDDNIRA
MESEVNVCYKELCGPRPGYQLLTNQLQRLCVVLDVYLETESHDTSVEGPKEFPQEKMCLR
LVRGPNRMKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgattcaagcaagaagaggaaacccaaggtcatccgcaccgatggggcccca
caggagagcaagcggagcagggctgaccctgaccaggatgtgaagtattacagtgaagag
gcagaggtggaactccgagatcccaacaaagactatgaactctacaagcaaacctgccag
gaacttcagaggctcatggcagaaatccaggatctgaagagcaaaggcagcaaagacagt
gctgttgcaatagaagagcgtcggatccagagctgcatgcacttcatgaccctgaagaaa
ctcaaccgtttggctcatattcgactaaagaaggggagagatcagacccatgaggcaaag
cagaaagtagacgcctatcacctgcaactccagaacctattgtatgaggtgatgcatctg
cagaaggagatcaccaaatgcctggagtttaagtcaaaacatgaggagattgatctagtg
agcgtggatgaattttacaaagaggctcctccagaaatcagcaaacctgacattaccctc
aatgagccgcaccaacagaccctggcccgcctcgactgggagctggagcagcgcaaaagg
ctggcggagaagtataaggagtgtctggccaacaaggagaagatcctgaaggagatagaa
gtgaagaaggaatatctgagtagcctccagccccggctcaacagcatcatgcaggcctcc
cttcctgtccaggagtatctcttcatgcctttcgaccaggcacacaagcagtacgagaca
gctagacacttgccaccacctctctatgttctctttgtccaagccaacgcctatggtcag
gcctgtgataagaagctggctgtggcaattgaagggagtgtggaagaagccaaggccctc
tacaagccaccagaggactcccaagatgacgagagtgattctgatgctgaagaggagcag
accacgaagcgtcgtcgccccacgctgggcgtgcagctggacgacaagcgcaaggagatg
ctgaagagacacccactgtctgttaccattgacctcaagtgcaaagacgacagcgtgctc
cacctgatcttcttctacctgataaacctcaatgtcatgacggtgaaaaccaaggtgacc
actgctacggagatgaccacgcccatcagtgctggagatctgctgtctccaggctccctg
ctgaactgcctgtatcctggggatcatgggaggagaactccaaatccagccaaccagttc
cagttcgataaagtcggcatcctgaccctgagtgattatgtgacagatctggggcacccc
tacatgtgggtgcagaagctgggtggcctgcatttccccaaagatcagcctcagcacaca
gtgaccgcagataactcgctgagtgccagccacatggagatgactatgaagttgctcagg
acgaggctgcagtcccgcctggctctccacaagcagtttgcttcacttgagcatggcatc
gtgccggtctccagcgagtgccagcatctcttcccttccaaggtcgtgtcacgcttggtg
aagtgggctgcgctcccctacgaggattacctggagctgtcctacaccaaagacgttgtg
gaggctggcttggctgaagacactcacctctattatatggctctggtagagagagggaca
gccaaactccaggcagctgtcgtgctgaatccgggctactcctccatgccacccatcttt
aacctgtgtctgaactggaaaggggagaaaaccaatagcaacgatgacaacattcgggca
atggagagcgaggtcaacgtgtgctacaaggagctgtgtgggccaaggcctggctaccag
ctgctgaccaatcagctgcagcgcttgtgcgtcgtgctggacgtctacctggaaacagag
tcccatgacaccagcgtggaagggcccaaggagttcccccaggagaagatgtgcctgcgt
cttgtcagggggcccaaccgcatgaagccgttcaagtacaaccatcctcaggggttcttc
agtcaccgctga
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