Caretta caretta (Loggerhead turtle): 125623230
Help
Entry
125623230 CDS
T09292
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03082
ATP-dependent chromatin remodeling
ccay03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125623230 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125623230 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccay01009
]
125623230 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125623230 (SMARCB1)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125623230 (SMARCB1)
Protein phosphatases and associated proteins [BR:
ccay01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125623230 (SMARCB1)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125623230 (SMARCB1)
SWI/SNF complex
125623230 (SMARCB1)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125623230 (SMARCB1)
PBAF complex
125623230 (SMARCB1)
SWI/SNF complex
125623230 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
125623230
NCBI-ProteinID:
XP_048678244
LinkDB
All DBs
Position
15:19831008..19853555
Genome browser
AA seq
386 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHESQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDA
EMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaaaaccttcgggcagaagcccgtcaagttccagctggag
gaggacggcgagttctacatgatcgggtccgaggtggggaactacctacgtatgtttcgt
ggctccctatacaagaggtatccctccctctggaggcgactagccacagtagaagagagg
aagaaaatagttgcatcttcgcatgagtctcagcggagtcacagccccagaagatatcat
ggttatacgacactagccactagtgtgactctcttgaaagcctctgaagtggaagagatc
ttggatggaaatgatgagaaatacaaggcagtgtctatcagcacagagcctcccacctac
ctcagagagcagaaggcaaaaaggaataaccagtgggtgccaaccctacccaacagctct
catcacctcgatgctgtgccatgctcaacaaccatcaacagaaaccgcatgggcagggat
aagaagagaaccttcccgctctgctttgatgaccatgacccggcagtgatccatgagaat
gcatcccagccagaggttctggttccaatccgattggacatggaaatcgatgggcagaaa
ctcagagatgcttttacgtggaacatgaatgaaaagctaatgaccccagaaatgttctcg
gagattctctgtgatgacctggatttgaatcctctgacctttgtccctgccattgcctct
gcaattcgacaacagattgagtcttatccaactgacagtatcctagaggaccaatcagat
caacgagttattattaagctaaatatccacgtggggaacatttccctggtagatcagttt
gaatgggacatgtcggagaaggagaactctccggagaagtttgcactgaagctgtgttca
gagcttgggctcggtggggaatttgtcaccaccatcgcttacagcattcggggacagctg
agctggcatcagaagacttatgccttcagtgagaaccctctgccaactgtagagatcgcc
attcgcaacacaggtgatgctgaccagtggtgccctctgctcgaaaccctgacggacgcg
gagatggagaagaagatccgagaccaagacagaaacacaaggcgcatgagacgtttggcc
aacactgctccagcctggtaa
DBGET
integrated database retrieval system
