Caretta caretta (Loggerhead turtle): 125623297
Help
Entry
125623297 CDS
T09292
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125623297 (SETX)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125623297 (SETX)
5.6.2.5 RNA 5'-3' helicase
125623297 (SETX)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125623297 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
nSTAND3
WavE
Helicase_RecD
TniB
Motif
Other DBs
NCBI-GeneID:
125623297
NCBI-ProteinID:
XP_048678330
LinkDB
All DBs
Position
16:10351548..10401529
Genome browser
AA seq
2854 aa
AA seq
DB search
MSTCCWCTPGGSSTTQFLRTYASKTLSPEDRAAANDDLCYCLECVVEYHKARDELPCLLQ
EILWELETSRLIDHFEKSMKTDIEEDDELFIVDDNGETKLSGYTGPDFENNLRVPLLEIL
KYPYLLLHERISELCVEALCKMEQVNFSFQVFDKHPGIYLLLVHPNEVIRRWAILTARNL
GKVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKLILLPSHLYDTTNYKNYW
LGICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKQTDDESIDPFWPALHCFMVILD
QLGSKVWGQLIDPVQAFQTIINNVSYNNEIKNIRNSSRRTKSEPESNYEEEMVTCSQIVY
NYNTEKPKKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGQDMRVHNSTFLWFIPFVQS
LMDLKDLGVAYIVEVIHHLCSEIKGFLSERVQQCDKVSEFFILILVSVVELHRNKKCLHL
LWVSSQEWVEAVVKCAKLPTIAFMRCSEKAPGNAPKLTPTISSQASNTVQHACVQLIRSL
LREGYQLGQQTVCKQFLDKLNLLLRGNLPMGWQLNNRETQELQMCLKQVIRSIKDRSSNA
SIPVENSVICTNLPTIPIKQEKGTASDRCQMNIQYRDSLSPPFSLASGSDEACQESSSPR
RRGIWEEEYREMSFNNTKLCVTAECLLTDIKKEPHDRSFQECEHPDSSGATKIHKDTPKN
GNNYQVQGNQNKNNSLLKQCFNTSPQVCDFKSHAILERDETEVRMPECLNAQSCSSSHED
THSSNGKDGSCSPNSCSKFKVDPDKITNLKTQVQNADWATKLLKLMKQSASNSEVDQLQS
RSESLCTSKDGSRDQEVNILNEGETSVNFNTSNASENKQENSMNSTFQIKLLSLKQESND
TKADYSNSIKKEAGLEESESGGEEDNIPLDTFIHYLKKKRSLSGRSSSLPKPLLNKDLNT
EIPDQGQSNSGSLCPKRGDLKDQKVSMLRTDKTSANFNSLSSSENKEEIPRNAPLISPLL
IKHESTDRLLDFSRYFKREGDSEEKRNHEDNAAVACDLVKQFGASPLTDSQIDRDLDKLS
LAAYAKGVNFPVDSSQECSVRLSHIKRKVKGAVRSSTKGQSNESSSDADCPNNEVIVISD
SSSDEEKKLDIKKPVKKDVYMCPEKQPLTPDYVSDSANKKEQLETHSSPLPCEEHNSQFF
EFETEDDVFSVWQDSQINDEEVNQAQEQDSNLTSTSKCASDSFELADRINDGGYDTDYIS
DDVIEKAEEVVERQVDSLSHKEVSKTGTKSEATFQEPAIQGNATAQSENSTQPDAVAKDH
AKNTGLMEPRASASSVSFASKLTIKKSTLSPGKNLAKSKLVRTALRSPRKVSLKTVQNKK
LPQTSSRNTEPCRSTPAVVPPKKVHQCPEPTSTVVKLGLKKAPRKAFELSQRSLDSLAEL
RSYGKAAGAVQTPQKQKTKLIAPQNLVTKHNRKMLACQDLPFRRQIRPTQVGRGKNQIGS
SEGRRKKITEKSDPKHPIQQPVDFDPVSAAGTSEKQKASTAERVWCPSSNDGKKVRKSFS
PGRKEVQTTHMSKMAPHGSKESNMKIEENNMAVPALQIKSCFSSSLNGDYKNETAEREYV
VPLVSPSTPNFEGATLEVSKPKLNEESDDDLFLTQLDPVDMEMCSQMENVGDIIIASEKE
LVDTEVDAAESLLQNEPLGIVKCKYKDCTEQVEKTVEYCRKHSASDASDHLFVKPALPPR
KPEKPSTTKIFSSNSSSRSANLTKDLENISKHSSSKAKSNVVKSRVSKTGNPKAVSTENQ
IVKTPSFSNSLRSQSSSNVLRPQNMQTNSTSCFPNRSALGAHSGQARGLPSFPQANALVT
QQRDHSIFVTEILKWNYEMFVNFSQFGLPHNLLQSIMVSVPVKFQGYNDYFNTFFPLMML
NAFETVAQEWIENQKTREKNCYHLHLQNFCADLNRADFTACIRESDLAKQLHPKDDDLIF
LVVPEKQNTFTEESEMESHLMYHVGFVTRFSRASLRETRQNEQHVVCHLSVQTRGNLSYY
INQPVKCVVVSSLVTTQRRFKGLLLLSRSPLAKPIINPSYTDFCPRDLNVTSESTTSYMR
DYNADQKKAIETAYAMVKEHPRLPRICLIHGPPGTGKSKTIVGLLYRILTERSGNENPAQ
NLNAKIKRNRVLVCAPSNAAVDELMKKIILEFKEKCQDRKNPLGNCGDINLVRLGPEKSI
STDVLRFSLDSQVSHRMNRGQPGRDQDIHRKKEALDRQLDSLSRQRAMDRCDKRQRSQKL
DEEIARLSRERQQLTSQLRQVGGRPQEVQASIILESHIICCTLSTSGGFLLESAFRRQGL
DPFSCVIVDEAGQSCEVETLIPLTHRCSKLVLVGDPKQLPPTVISMKAQEYGYDQSMMAR
LHKHLEEQMQQNVTGKLPVLQLTVQYRMHPDICLFPSNYIYGRTLKTDRATEENRCSSDW
LFQPYLVFDVADGHEKRNNDSFANPQEVKLVMEIMKLIKEKKNDIGFRHIGIITPYSAQK
KMIQQELDREFGRGRAGEVDTVDGFQGRQKDCIIVTCVRANSTQGSIGFLASLQRLNVTI
TRARYSLFILGRLTTLMDNKDWNKLIQDAQRRGAIIKTCDKNYKRDAVKILKLKPTLQRP
LSYPPTAALSEKATQMQACLGNDGKNKVPNRKSSNDSGILSACAGLSAQGNGVVRQAPES
QALGFKGVTLPTPVQPAVRERPRDPRLARRAEATGKEQASKNSNPSALSNPDVTLSRGPD
ASAAHWGQISTVQPTVSKAENSNKPNQTVRQPDMPFTASHTARQDHDWRVSVSSKEARTG
SKDKDCRTPASRRALEQPPENKDLSEAKRRKVSY
NT seq
8565 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgttgttggtgtacgcctggtggttcctccaccacccagttcctaagaact
tatgcttccaagactttgtctcctgaagatcgtgcagcagccaatgatgatctctgttac
tgcctggaatgtgtggttgaatatcacaaggcaagggatgaattgccatgcttactgcag
gagatcttatgggagttggaaacctcccgtctcatagaccactttgagaaatccatgaag
acagatattgaagaggatgatgaattatttatagtggatgacaatggggaaactaaactg
tctggttacacaggcccagattttgagaacaacctgcgtgtacctcttctagaaatactg
aaatacccatacctgctgctacatgaacgaatcagtgagctctgtgttgaggctctttgt
aaaatggaacaagttaacttctcctttcaggtctttgacaaacatccaggcatttatctg
ttgttggtacaccccaatgaagtgattcgtcgatgggccatcctgacagcaagaaattta
gggaaagtcgacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaa
gtcattgagttggggctgtttgacagtcctgatatttatagttcttcaatgattgagaag
gggaaactcattcttctgccatcccatttgtatgataccaccaactacaaaaactactgg
cttggtatctgtatgttgctaacagtgctggaagaacaagctatggattctttgttgctg
ggtccagataagcagaatgatttcatgcagtctatacttcacaccatggagaaacaaaca
gatgatgaaagcattgatcctttctggccagcgctgcactgttttatggtgattttggat
cagctcgggtctaaagtatggggtcaactcatcgatccagtccaggcctttcaaaccatt
atcaacaatgtcagctacaacaatgaaataaaaaatatacgcaatagttcaaggaggact
aaatctgaaccagagtcaaactatgaggaagaaatggttacttgcagccagatagtgtat
aattataacacagaaaagcccaaaaaggatactggatggaagacagccatttgtccggat
tattgccccaacatgtacgaagatatgcagacattggctaatgtgcttcaatctgatatt
ggccaagatatgcgtgtccataacagcacatttctatggtttattccttttgttcagtcc
ctaatggacctcaaggacttgggcgtggcttatatagtagaggtcattcaccatctgtgc
tcggaaatcaaaggctttctcagtgaaagagtccagcaatgtgacaaagtttctgaattt
ttcatcctgattttggtgtcagttgttgaactacacagaaataaaaagtgcctgcatttg
ctttgggttagctctcaggaatgggtggaagcagtagtgaaatgtgctaaacttccaact
atagcatttatgcgctgctctgaaaaagcacctggaaacgctcctaaacttacaccaaca
atatcttcacaggcttctaacactgtacagcatgcttgcgtgcagttgatacgcagcctt
cttcgagaaggctaccagttagggcaacaaactgtttgcaaacagtttctagataaactc
aatctgcttttgcgtggaaacttacctatgggttggcagctgaacaaccgggaaactcag
gaattgcaaatgtgtttaaagcaggtaataagaagtataaaggacagatcatcaaatgct
tccatacctgtggaaaatagcgtgatctgtacaaatttgcccaccattcctataaagcaa
gagaaagggacagccagtgacaggtgtcagatgaatatacaatacagggatagcctcagt
cccccattttctttagcatctgggagcgatgaggcttgtcaagagagttcttccccaaga
agaagaggtatctgggaagaggaatatagggaaatgtcttttaacaatacaaaattatgt
gtaactgcagaatgccttttgacagatattaaaaaagaacctcatgataggtcatttcag
gaatgtgaacatcccgatagctctggagcaacaaaaatacacaaggatacccctaaaaat
ggaaacaactaccaagtgcaggggaaccaaaataagaataactccttacttaaacagtgc
ttcaacacaagtcctcaagtctgtgatttcaaaagtcatgctatattggagagagacgaa
acagaagtgaggatgccagagtgtctgaatgctcaatcttgttccagttctcatgaagac
actcacagctcaaatggaaaggatggaagttgctcccctaattcctgttcaaagtttaag
gtagatcctgataaaatcacaaatttgaaaacccaggtacagaatgctgattgggccaca
aaactattgaagttaatgaagcaatcagcttcaaattcagaagtagaccaactacagtct
cgctctgagagtctctgtacaagtaaagatggcagcagagatcaggaagtgaatattttg
aatgaaggtgaaacctcagttaactttaatacttcaaacgcttctgaaaataaacaggag
aacagcatgaacagtacttttcaaatcaagctgctctctcttaagcaggaatcaaatgac
accaaggcagattattcaaattccattaaaaaagaggctggtttggaagaaagtgaaagt
ggaggtgaagaagacaatattccacttgatacgtttatacattatttaaagaaaaagaga
tctctttcaggaagatcaagttctttgccaaagcctttactgaataaagacctgaacaca
gaaataccagatcaaggacagtctaattctggcagtttatgcccaaagagaggtgacctc
aaagatcaaaaagtgagcatgctacgtacagataaaacttcagcaaattttaacagtcta
tctagttctgaaaataaagaggagatacctaggaatgctcctctaatcagtcctctctta
attaagcatgagtcaactgacagactgttagatttttcaagatattttaaaagagaaggc
gattcagaggaaaaaagaaatcatgaagataatgcagcagttgcatgtgatttggtaaag
caatttggagctagccccttaacagactctcagatcgatagagaccttgataaattatcc
ttagccgcttatgccaaaggtgtcaattttcctgttgattcaagccaagaatgctcagta
cgtctgagtcacattaaaaggaaagtaaaaggtgctgttagatcatccacaaagggccaa
agtaatgagtcctcttctgatgcagattgtcccaacaatgaagtcatcgtcatttcagat
tcttcttctgatgaggaaaaaaagttggatattaagaaaccagtaaaaaaagatgtgtat
atgtgtccagaaaaacagcctttaacacctgactatgtttctgatagtgcaaacaaaaaa
gagcaattggagactcatagctcccctttgccatgtgaggaacataattctcagtttttt
gagtttgaaactgaagacgatgtcttttcagtctggcaagattctcagataaatgatgag
gaagtgaatcaggcacaggaacaagactctaacttgacatcaacaagcaaatgtgcttca
gatagttttgagttggcagatcgtataaatgacgggggttatgatacagattatatcagt
gatgatgtcattgaaaaagcagaagaggtcgttgaaaggcaggtagattctctgtctcat
aaggaagttagtaaaactggcacgaaatctgaggcaacttttcaagagcctgctatccag
ggaaatgcaactgctcagtctgagaattctactcagccagatgctgttgctaaagaccat
gccaaaaacacaggcttgatggaacccagagcatctgcatctagtgtatcatttgcttca
aagttgactattaaaaaaagcactttaagcccaggcaaaaacttagcaaaatccaagttg
gtaagaactgcccttagaagtcccagaaaagtgagccttaaaactgtgcaaaacaaaaaa
cttcctcagactagttctagaaatactgagccttgcaggtcaacccctgctgtagttcct
ccaaagaaagttcaccagtgtcctgagccaacttcaactgtggtcaaacttggcctaaaa
aaggccccccgcaaagcatttgagttatcccagcgatccttagatagtctggctgaattg
cgcagttatgggaaagctgctggggcagttcagactccacagaaacaaaaaactaaatta
attgctccacagaatctagttacaaaacataatagaaaaatgttagcctgccaagatctt
ccgtttcggaggcagataagacccacacaagtggggagagggaaaaatcagataggaagt
tctgagggcagaaggaaaaaaataactgaaaagtctgatccaaagcacccaatacaacag
cctgtggattttgacccagtatctgctgcgggaactagtgaaaaacaaaaagcaagcaca
gctgagcgggtatggtgtccctcaagcaatgatgggaaaaaagtgagaaaaagcttctca
cctgggagaaaggaagtccaaactacacacatgagtaaaatggctccacatggttctaag
gaatctaacatgaaaatagaagaaaacaatatggcagttcctgcattacagatcaaatca
tgtttttcttcatctttaaatggagactacaaaaatgaaactgcagagagagaatatgtt
gtccctctggtttccccatctacacctaactttgagggggcaactctggaagtgagcaag
cctaaattaaatgaagagagtgatgatgatttatttttaactcagttagatcctgtggat
atggaaatgtgttcgcagatggaaaatgttggcgatattataatagctagtgaaaaagag
ctagtagacacggaagtagatgctgctgaaagtctgctgcagaatgagcccttaggtatt
gtgaagtgtaagtacaaagattgtacagaacaggtggaaaagacagtggagtactgtagg
aagcattctgcctctgatgcttcagatcatctctttgtcaagccagctttaccacctcgt
aagcctgaaaaaccttccactactaaaattttcagctcaaatagctcttcacggagtgcc
aacctcacgaaggatcttgaaaatatttcaaagcactcgtcatcaaaagccaagtcaaat
gtggtaaaatccagagtgtccaagacagggaatccaaaagctgtatcgacagagaaccag
atagtcaagaccccaagtttcagcaatagtcttcggtcccagagttccagcaatgttctc
cggccccagaacatgcagacaaacagtacttcatgttttcccaacaggtctgccttaggg
gctcattcagggcaagcaagaggtctcccttcctttccacaagcaaatgctcttgtcact
caacaacgtgatcatagtatttttgttacagagattctgaaatggaactatgaaatgttt
gtcaacttcagccagtttggacttccacataatctccttcaatcaattatggtctctgtt
cctgtcaaatttcagggatacaatgactattttaatacatttttccccttgatgatgcta
aatgcctttgaaacagttgcacaggaatggatagaaaaccagaaaacaagagagaaaaat
tgttatcatttgcacttacaaaatttctgcgctgacttgaatcgagcagattttacagca
tgcattcgggaaagtgatctggcaaaacagcttcatccaaaggatgacgacttgatcttt
ttggtggtgcctgaaaaacaaaacacctttacagaggaaagtgagatggagagccatcta
atgtatcatgttggttttgtgacccgcttctcccgtgcatcactccgtgaaacgaggcaa
aatgagcagcatgttgtctgtcacctttctgtccaaactcgaggcaatttgtcatactac
ataaatcagccagtgaaatgtgtagtggtcagctctctagtgaccacgcaacgaaggttc
aaaggtctgctactgttgagcaggagtcctctggctaaacccatcataaatccaagttac
actgacttctgtcccagggatttgaatgtaacttcagagagcactacttcctacatgaga
gactacaatgcagatcagaagaaggctattgaaactgcttatgctatggtgaaggagcat
ccaagacttcccagaatctgcctgatccatgggccacctgggacagggaaatcaaaaact
attgttggactcctgtaccgtattctgacagagaggtctgggaatgagaatccagctcaa
aacttgaatgccaagatcaagcgaaaccgtgttctggtttgtgcaccatccaatgctgct
gttgatgaactcatgaaaaagataatcttggaattcaaagaaaaatgccaagacagaaaa
aatcctttgggaaattgtggagatataaacttagtgcgactaggtccagaaaagtcaata
agcactgatgtcctgagattcagcctggacagccaagttagccacaggatgaacagggga
caacctggccgtgaccaggatattcacaggaaaaaggaagctctagatcgccagctggac
agtctctctcggcagcgtgccatggatagatgtgataagaggcagaggagtcaaaagtta
gatgaggaaattgccagactttcaagagagcggcaacaactcacttctcagctgaggcag
gttggagggcgccctcaggaagtgcaggctagcatcatcttggagtcccacatcatctgt
tgcacattgagcacaagcggaggctttctgctggagtctgcttttcgccggcaaggactt
gaccctttcagctgtgtcattgtggatgaggcagggcagtcatgtgaggttgaaactctg
atcccattgactcatcgctgtagtaaacttgtccttgttggagatcccaagcagctgcct
cctactgtaatatctatgaaagctcaagagtatggctatgatcagtctatgatggctcgc
ctgcacaaacacctggaggaacagatgcagcagaatgttacagggaagctgcccgtttta
cagctgactgtacaatataggatgcatcctgacatctgcctcttcccatccaattacatt
tatggcaggactttaaagactgacagagcaacagaagagaacagatgttcttcagattgg
ctattccagccatacctggtctttgatgtagcagatggccacgagaaacggaataatgac
tcttttgctaatccccaggaagtaaagctggtgatggaaataatgaaattgattaaagaa
aaaaagaatgatattggttttcgtcacataggaataatcaccccttacagtgcacagaaa
aagatgattcaacaagaactggacagagagtttggcaggggcagagcgggagaagtagac
acagttgacgggttccagggtcgacagaaagactgcattatagtgacgtgtgtaagagcg
aacagcacacaagggtcaattgggtttctggcaagtcttcagcgtctgaatgttacaatt
acccgagccaggtacagcctcttcatccttggaagattgacaacgttaatggacaataaa
gactggaataagctgattcaggatgctcagagaagaggcgctatcatcaagacttgtgac
aaaaactataaaagagatgctgttaaaattctgaagctcaaaccaacattacagcggcca
ctctcttatcctcctactgctgcgctgtcagagaaagctactcaaatgcaggcgtgtttg
ggcaatgatgggaagaataaggtccccaacagaaaaagcagcaatgactctggaatactc
tcggcctgtgctggcctgtcagcacaaggcaatggagtagtaagacaggcaccagagtct
caagctttgggtttcaaaggagtcactcttcccacaccggtgcagcctgctgttcgagag
agaccacgggatccaagactggctaggagggcagaagcgacagggaaggagcaggcctcc
aagaatagcaatccatcagccctgagcaatccagatgtgacattgtcacggggacctgat
gcatcggcagcccactggggtcagatcagcactgtgcagcctactgtctccaaggcggaa
aattccaacaaacccaaccaaactgtaagacagccggacatgcctttcactgcttcccat
acagccaggcaggaccatgactggagagtttctgtctcctcaaaagaggcaagaactggc
agcaaagacaaggactgtcggacccctgcaagcagaagagcattggaacaacccccagag
aacaaagacttgagtgaggccaagaggaggaaggtctcctattag
DBGET
integrated database retrieval system
