Caretta caretta (Loggerhead turtle): 125623399
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Entry
125623399 CDS
T09292
Symbol
CACNA1B
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04010
MAPK signaling pathway
ccay04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125623399 (CACNA1B)
04020 Calcium signaling pathway
125623399 (CACNA1B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccay04040
]
125623399 (CACNA1B)
Ion channels [BR:
ccay04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
125623399 (CACNA1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Tachystatin_A
Motif
Other DBs
NCBI-GeneID:
125623399
NCBI-ProteinID:
XP_048678657
LinkDB
All DBs
Position
16:complement(18818001..19293822)
Genome browser
AA seq
2395 aa
AA seq
DB search
MARFGDDLPTRYGGGGPAGAGRGSSRQGGPPPGQRMYKQSMAQRARTMALYNPIPVKQNC
FTVNRSLFIFSEDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPEDDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATAGTDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGLEFYMGK
FHKTCFSNETGEEVGDFPCGEDPPARQCENGTTCRKYWPGPNYGITNFDNILFAVLTVFQ
CITMEGWTDILYNTNDAAGNTWNWIYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENR
RAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLDGRAASEGPVQQGTAP
AETGGSSYNMLKRATIKKSKNDLIHAEEGEDHFTDICSVGSPFARASLKSGKNESSSYFR
RKEKMFRFFIRRMVKAQSFYWIVLCVVTLNTLCVAMVHYDQPEGLTTALYFAEFVFLGLF
LTEMSLKMYGLGPRNYFHSSFNCFDFGVIVGSIFEVIWAAVKPGTSFGISVLRALRLLRI
FKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFQDETPTTN
FDTFPAAILTVFQILTGEDWNAVMYHGIVSQGGVHSGMFSSIYFIVLTLFGNYTLLNVFL
AIAVDNLANAQELTKDEEEMEEATNQKLALQKAKEVAEVSPMSAANISIAAFVKQTRGTV
SRSSSVSSVNSPKQQNSSKSKSVWEQRTSQIRMHNFRASCEALYNELDPEERVRYATTLH
IRPDMKTHLDRPLVVEPRTEGRNNVGKLSPVDVQETEQAKATSADSAEVPRKHHRHRDKD
KMGEQEKSDVAKDENGESGTNNKEERHRQHRSRSKEAEGGSKEGKSDRNRSQEGGKRHHR
RGSVEEGAEKEYRRHRTHRHSAERQAKEGNGTANGARSERRSRHRGGSRSGNREGDPGLK
GENGEEPHRRHKIRHRALSTYESVEKENGEKEGEAGEKDLKNHQPREAPCETEAGGSVSV
VPVHTLPSTYLQKVPEQPEDADNEKNVTRMTQPPLDKTATVNIPVTITAPPGETTVIPMN
NVEFESKTEEKKDMEIDDLTKNGPKPILPYSSMFILSPTNPIRRLFHYIVNMRYFEMVIL
IVIALSSIALAAEDPVQAESPRNDALKYLDYIFTGVFTFEMVIKMIDLGLLLHPGSYFRD
LWNILDFIVVSGALVAFAFSGSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVN
SLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKELEKDCRGQYLDYEKSEVEAQ
PRQWKKYEFHYDNVLWALLTLFTVSTGEGWPTVLKHSVDATYEEQGPSPGYRMEMSIFYV
VYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDFAISARPLTRYMPQNK
QSFQYKMWKFVVSPPFEYFIMVMIALNTIVLMMKFYGAPDAYEEMLKCLNIVFTSMFSME
CVLKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIADNFINLSFLRLFRAARLIKLL
RQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDDTSINRHNNFR
TFLQALMLLFRSATGEAWHEIMLSCLSNRACDRLSGLTKNECGSDFAYFYFVSFIFLCSF
LMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGHISYTDMYEMLRHMS
PPLGLGKKCPARVAYKRLVRMNMPISDPDLTVHFTSTLMALIRTALEIKLASAGVKQHQC
DAELRKEISLVWPNLSQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKNSREQVHQP
PGGLCQVPSSKTLFPLLTPTKTGPVSLFHPLKATLEQTQPLVFNHAKAFLRQKSCTSLNN
GGTLPAPESGIKESVSWGTQRTQDVFYETRTPAFERGHSEEIPIERTSKQVVEMREISPT
LTNGEHQPGLESQGRAASMPRLAAETQVREGGFTGNGKLTTIPDTSPMKRSISTLTPQRP
HAMHLYEYSLERMPPDQAHHHHHHRCHRRKDKKQKLLDRSPNQLADGDAGEASSKDKKQE
RGRSQERKLHSSSSSEKQRFYSCDRYGSRDRSQPKSADHSRPTSPNGGLEPGPHRQGSGS
VNGSPLLSTSGASTPCRGRRQLPQTPLTPRPSITYKTANSSPVHFTSFQTSLPTFSPGRL
SRGLSEHNALLHGDSQSHSRSPVARIGSDPYLGHRDDSDSPYRVVPEDTLTFEEAVATNS
GRSSRTSYVSSLTSQSHQIRRVPNGYHYTLGLSTGPGTCTRARGYYHEADEDDWC
NT seq
7188 nt
NT seq
+upstream
nt +downstream
nt
atggctcggttcggagatgatctgcccacccgctatggaggcggaggtccggccggggct
ggaagagggagcagccggcaaggtggccccccacccggccaaaggatgtacaagcagtcg
atggcccagagagccaggactatggctctctacaaccccatccccgtcaaacagaactgt
ttcaccgtcaacagatccctcttcatcttcagcgaggataacgttatacgaaaatacgcc
aagagaataaccgaatggcctccatttgaatacatgattttagctacaatcatagccaat
tgcattgttttggctttggagcagcatctaccagaggatgacaagacacccatgtcagag
agattggatgatactgagccgtactttattggaatattttgttttgaagctggtataaaa
atcatcgctctggggtttgcttttcacaaaggctcttatctccgaaacggctggaacgtg
atggattttgtcgttgtcctcacagggattctagccaccgctgggactgattttgaccta
cggaccctgcgagctgttcgggtattgagacctttgaagttggtgtcaggaattccaagt
ttgcaggttgtcctcaagtccatcatgaaggccatggtgcccttgctccagatcgggctg
cttctcttctttgctatagtgatgtttgccatcattgggctggagttctacatggggaag
tttcataaaacctgcttctcgaatgaaacaggtgaggaggtgggagattttccttgtgga
gaggatccccctgccaggcaatgtgagaatggaaccacatgcaggaaatactggccaggc
cccaactatggaattaccaactttgacaatattctgtttgctgtgctaactgtcttccag
tgcatcaccatggagggctggactgacatcctctacaataccaatgatgctgcaggaaat
acctggaactggatttacttcatccctctcatcatcattggctctttcttcatgctcaac
ctggtgctgggcgtgttatcaggcgagttcgccaaagagcgtgagagggtagagaaccgc
cgggccttcctgaagctccgtaggcagcagcagatcgaacgagagctgaacgggtacttg
gagtggatcttcaaggcagaggaggtgatgctggcagaagaagacaagaatgctgaagag
aagtcccctctggacgggagggccgcctccgaagggccagttcagcaaggcacagcaccg
gcggagactggcggcagcagctacaacatgttgaaaagagctacaataaagaagagcaaa
aatgacctgattcatgctgaagagggagaggaccatttcacagacatttgctccgttggg
tctccatttgcccgggccagtctgaagagtggaaagaatgagagctcctcatatttccgg
aggaaagagaagatgttccggttcttcatccggcgcatggtgaaagcacaaagcttctac
tggatcgtcctgtgtgtcgtcaccctgaacactctgtgtgtcgccatggtgcattatgac
cagccagaggggctcaccactgctttgtattttgcagagtttgttttcctgggtctcttc
cttactgagatgtccttgaagatgtacggactggggccaagaaattacttccactcctca
ttcaactgcttcgactttggggtgatagtggggagcatttttgaagtgatttgggcagca
gtgaagcctggtacctcatttggcatcagtgtattgagggctcttcgactgctgaggatt
ttcaaagtaaccaaatactggaactccctaaggaatctggtggtctccttgctgaactcc
atgaaatccatcatcagtttgctcttcctgctcttcctgttcattgtggtgtttgctctg
ctgggaatgcagctctttggaggacagtttaattttcaagacgaaacaccgaccacaaac
ttcgatacattccctgctgccatcctcactgtgttccagatactgactggtgaagactgg
aatgcagtgatgtatcatgggatagtatcacaaggtggtgtccactcaggaatgttctct
tccatttacttcatcgtcctgactttgtttggtaactacacactcctgaatgtcttcttg
gctattgctgtcgacaatcttgcaaatgcacaagagttaaccaaggatgaagaggagatg
gaagaggctaccaatcaaaagcttgcgctccagaaggccaaggaggtagcagaagtcagt
cccatgtccgcagctaatatttccatagcagcttttgtaaagcaaactcgaggtactgta
tctcgcagctcgtcagtctccagcgtaaattcacccaaacagcagaactcctccaaatcc
aagtccgtttgggaacagaggaccagccagatccggatgcacaatttccgggccagctgt
gaggcgctgtacaatgagctcgacccggaggagcgggtgcgctatgctaccaccctccac
atccggccagacatgaagacccatttggatcggcctctggtggtagagccaaggaccgaa
gggcggaacaatgtcggtaagctaagcccggtggacgtccaggagaccgagcaggccaag
gccacctctgccgacagtgcagaagtgccacggaagcaccaccggcatcgggataaggac
aagatgggagagcaggagaagagcgacgtggccaaggatgagaacggggagtctggcaca
aacaataaggaggaacgtcacaggcagcacaggagccgcagcaaagaggccgaggggggc
agcaaggaaggaaaaagtgaccgcaacagaagccaggaagggggcaaaaggcaccatcgt
cggggctccgtggaagaaggggctgagaaggagtaccggcggcaccggacccaccggcac
tcagcggagcggcaagcaaaggaaggcaacgggacagccaatggtgccagaagcgagcgg
cgttcacgtcaccgaggagggtcaaggtcagggaaccgggaaggcgatcctggcttgaaa
ggagagaatggggaagagccccacagacgacacaagatccggcacagagctctatcgacg
tatgagtcggtggagaaggagaatggggagaaggaaggagaggctggggagaaagatctt
aagaaccatcagcccagggaagctccgtgtgagacagaggctgggggtagcgtgagtgtc
gtcccagtacataccctgcccagcacctacctgcagaaagtgcctgagcagccagaagat
gctgacaatgagaagaacgtgacacggatgactcagccaccactggacaaaaccgccact
gtgaacatccccgtcaccatcactgcgcctcccggggagaccactgtcataccaatgaac
aacgttgaatttgaaagtaaaacggaagagaagaaagatatggagattgacgacttgacg
aaaaatggacctaagccaatcctgccttatagctccatgtttatcttaagccctacgaac
ccaatccgacgcctgtttcattacattgtgaacatgcgctactttgagatggtcatcctc
atcgtcatagcactgagcagcatcgccctggctgccgaagaccctgtccaagctgagtct
ccgaggaatgatgcgctgaagtatctggattatatatttacgggtgtctttaccttcgag
atggtgataaagatgattgacctggggctgctgcttcatccgggctcctatttccgtgac
ctgtggaacatcttggattttattgtggtcagtggggccctggtggcatttgccttctca
ggaagcaaaggcaaagacatcaacacaatcaagtcactgcgagtcctgcgagttctaaga
cctttgaagactatcaagcgtctgcccaagttaaaggctgtctttgactgtgtggtgaat
tccctgaagaacgtcctcaatatcctaattgtttacatgctcttcatgttcattttcgct
gtcattgctgtgcaactcttcaaaggcaaattcttctactgtacggatgagtccaaggag
ctagaaaaggactgcaggggtcagtatctggattatgagaagagtgaggtggaggcacag
cccaggcagtggaaaaagtatgagtttcactatgacaacgtgctctgggctctgttaaca
ctgttcacggtctccacaggagaagggtggccaactgtattgaagcattcggtggatgct
acctatgaggagcagggtcccagccctggttatcgaatggaaatgtccatcttttacgtg
gtgtactttgttgtcttccccttcttctttgtgaatatatttgtggcgttaatcatcatc
accttccaggagcaaggcgataaagtcatgtcggagtgcagtctcgaaaaaaatgagagg
gcctgcatagacttcgccataagtgccaggccactgacccgctacatgcctcaaaacaag
cagtcttttcagtacaagatgtggaagtttgtggtgtcccctccctttgaatattttatc
atggtcatgattgcactcaatactattgtgctgatgatgaagttctatggtgctccagac
gcatatgaagaaatgttgaaatgcctgaatattgtatttacgtctatgttttcaatggaa
tgcgttttgaagatcattgcctttggtgtactgaattatttccgagatgcctggaacgtc
tttgatttcgtaacagtattgggaagtattactgatattttagtaaccgagattgcggac
aacttcatcaacctcagcttcctgaggctcttcagggcagccagactcatcaaacttctt
cgccagggttacaccatccgcattctgctctggacatttgtacagtcttttaaggccttg
ccttatgtgtgtctcctcattgcgatgctcttcttcatctatgccattattggcatgcag
gtatttggaaacattgcactagatgatgatacctcaattaatcggcacaacaacttcaga
actttcttgcaagccctgatgctattgttcaggagtgccactggggaagcttggcacgaa
atcatgctgtcctgcctcagtaacagagcctgcgacagactctccggcctcaccaaaaac
gaatgtggcagcgactttgcctatttttacttcgtctccttcatcttcctttgttccttt
ctgatgttgaacctgtttgtggctgtaatcatggacaactttgagtacctgacacgagac
tcttccatcctaggaccccatcacctggatgagttcattcgggtctgggctgaatacgac
ccagctgcctgcgggcacatcagttacactgatatgtatgagatgctgagacacatgtcc
ccacctctaggcctgggaaagaaatgccctgctcgagttgcctataagcgcctggtgcgg
atgaacatgccgatctcagatccggacttaacggtccacttcacttccacgctgatggcc
ttgatccggaccgctctagaaatcaaactcgcgtcagcgggtgtgaagcagcaccagtgt
gatgctgagctgaggaaagagatctctctggtttggcccaatttgtctcagaagacattg
gacttgttggtgccgccccataaacctgacgaaatgactgtggggaaggtctatgccgct
ctcatgatattcgacttctacaagcagaataaaaacagcagggaacaagtgcaccagcca
cctggaggtctttgccaggtacccagcagcaagacgctgttccctcttctcactcccacc
aagactggaccagtgtcgttgttccaccccttgaaagcaaccctggagcaaacccagcct
ctggtgttcaaccatgctaaagcattcctccgccagaaaagttgcacctcgctcaacaat
gggggcacattgccagccccagagagcgggatcaaggagtctgtttcgtgggggactcag
cgcactcaggatgtgttttacgaaaccaggacaccagcttttgaacgaggccactcagaa
gaaattcccattgaacggacaagcaaacaggttgtagaaatgagagaaatcagccccacc
ctgaccaacggagaacaccagcctggcctggagagccaggggcgggcggcttccatgccg
cgtctggccgccgaaactcaggtgagggagggaggctttactggcaatggaaaacttaca
accatcccagacaccagccccatgaagcgctccatctccacgctgacgccgcagcgtccg
catgccatgcacctgtacgagtattccctggagcgcatgcccccagaccaggctcatcac
caccatcaccatcgctgccatcgacggaaagacaagaagcagaagttgttggacaggtca
cccaaccagctggccgatggggatgccggtgaggcgtcttccaaggataagaaacaggaa
cgaggcaggtcccaagagagaaagctgcactcctcctcttcctctgaaaaacagcgcttc
tactcctgcgaccgctacgggagccgggaccgttctcagcccaaatcagctgatcacagc
aggcccacctcgcccaatggggggctggagccaggcccccacagacagggtagtggttca
gttaatgggagccccttgctgtcgacatctggtgctagcaccccgtgccgtgggcggagg
cagctcccgcagactccgctgaccccccgccccagcatcacttacaagaccgccaactcc
tcacccgtgcacttcaccagtttccaaaccagcctgcccactttctccccgggacgcctg
agccgaggtttgtctgagcataatgcgttactgcatggggactctcagagccactctcgc
tccccggtggcccgcattggttctgacccctaccttggacaccgcgacgacagtgacagc
ccgtaccgtgtcgtgcccgaggacacgctcacctttgaggaggctgtcgccaccaattca
ggaaggtcctcaaggacttcttatgtctcatccttgacttcccagtctcaccaaatccgc
agggttcccaacggctaccactacacattgggcctcagcacaggccctgggacatgcacc
agagcacgtggctattaccatgaagccgatgaggacgactggtgctag
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integrated database retrieval system
