Caretta caretta (Loggerhead turtle): 125623542
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Entry
125623542 CDS
T09292
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125623542 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125623542 (PRPF4)
Spliceosome [BR:
ccay03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
125623542 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
125623542
NCBI-ProteinID:
XP_048679057
LinkDB
All DBs
Position
16:25409560..25426209
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AA seq
540 aa
AA seq
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MASSRAPAMRLVPGRAPLPQPGPAPSPRATKNKLSEDSDAPPPKRSHIFYGSLEEKERER
LAKGESGLLGRERVKAAIEAGNINITSGEVFDLEDHISERQAEVLAEFERRKRARQINVS
TDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEY
QQTWYHEGPNSLKTARLWIANYSLPRATKRLEEARLYKEIPEATRTSQKQELHKSLRSLN
NFCSQIGDDRPISYCHFSPNSKLLATACWSGLCKLWSVPDCSLVHTLRGHNTNVGAIVFH
PQATVSLDKKDVNLASCAADGSVKLWSLESDEPVADIEGHTMRVARVMWHPSGRFLGTTC
YDHSWRLWDLQAQEEILHQEGHSKGVYDIAFHIDGSLAGTGGMDAFGRVWDLRTGRCIMF
LEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRKCVYTIPAHQNLVTGVKFEPTHG
NFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcgcgggcccccgccatgcgtctcgtcccggggcgggccccgcttccccag
ccaggcccggctccatccccgcgggcaacaaaaaacaagctctcagaggacagtgatgct
cccccacccaagagatcccatatcttctacggcagtttggaggagaaggaaagggaacgt
cttgccaaaggagaatcagggctgctgggaagagagagagtgaaagctgcgattgaggca
ggcaatattaacataaccagcggtgaggtctttgatcttgaagaccacataagtgagcgt
caggcagaagtgttggctgagtttgagcgcaggaagcgtgccaggcagatcaacgtttcc
acggatgactctgaagtcaaggcatgcctacgagcacttggggagcccatcacgctcttc
ggagaggggcctgcagaacggagagaaagactgagaaatatcctctcggtggttggcaca
gatgccttaaaaaagaccaagaaagatgatgaaaaatctaagaaatccaaagaagagtat
cagcaaacttggtaccatgaagggcctaacagcctgaaaacagctaggttgtggatcgcc
aactactcactccccagggcaacgaagcggctggaagaagcccgtctgtacaaagagatt
ccagaggcgaccaggacatcccagaagcaagaactgcacaaatccctgaggtccttgaat
aatttctgcagtcagattggggatgaccgcccgatatcttactgccatttcagtcccaat
tccaaactcctggctacagcctgctggagtggcctgtgcaagctctggtctgtgcctgac
tgcagtcttgttcatactttacgagggcacaacaccaacgtaggagcaatagtgttccat
ccccaggctactgtctccctggacaagaaggacgtgaacctggcctcttgtgcagctgat
ggctctgtcaaactctggagccttgaaagtgatgaaccagtggcagatatcgagggccac
acaatgagagtggcacgagtgatgtggcatccctccgggaggttcctgggcaccacttgc
tatgatcactcctggcgcctctgggacctgcaagctcaagaggagattctccatcaggag
gggcacagcaagggggtctatgacatcgccttccacattgatggctctcttgctgggact
ggtggcatggatgcctttggtcgggtgtgggatctgcgtactgggcgctgtatcatgttc
ctggagggccacctgaaggaaatctatgggattaatttctccccgaatggatatcacata
gcgactggcagtggagacaacacgtgcaaagtgtgggacctccgccagaggaagtgtgtc
tacaccatacctgctcaccagaacctggtgaccggagtgaagtttgaacctacgcatggt
aacttcctgctcaccggcgcttatgataacacagccaagatctggactcacccaggctgg
tcccctctgaaaacgctggctggccacgagggaaaagtaatgggactggatatctcctca
gatgggcagctaatagcaacatgctcatatgacagaaccttcaagctgtggatggcagag
tag
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