Caretta caretta (Loggerhead turtle): 125623992
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Entry
125623992 CDS
T09292
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03030
DNA replication
ccay03420
Nucleotide excision repair
ccay03430
Mismatch repair
ccay03440
Homologous recombination
ccay03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125623992 (RPA1)
03420 Nucleotide excision repair
125623992 (RPA1)
03430 Mismatch repair
125623992 (RPA1)
03440 Homologous recombination
125623992 (RPA1)
03460 Fanconi anemia pathway
125623992 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccay03000
]
125623992 (RPA1)
03032 DNA replication proteins [BR:
ccay03032
]
125623992 (RPA1)
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125623992 (RPA1)
Transcription factors [BR:
ccay03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125623992 (RPA1)
DNA replication proteins [BR:
ccay03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125623992 (RPA1)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125623992 (RPA1)
MMR (mismatch excision repair)
125623992 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
125623992 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
125623992
NCBI-ProteinID:
XP_048680186
LinkDB
All DBs
Position
17:complement(23972395..24023753)
Genome browser
AA seq
616 aa
AA seq
DB search
MSARLSEGAIAAIMQGENNLKPVLQVINIRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLIEEERLSAHCICQVNRYIVNSLKDGRRVIILMDLDVLKTADVVGANIGNPVPYNEG
QGHQQQRSSVPAASPTHSKPQQQNGNSAVGPTTTKYHGPSKQFGKAGGTSFLSTPGGSQS
KVVPIASLNPYQSKWTICARVTQKGQVRTWSNSRGEGKLFSMELVDESGEIRATAFNDQV
DKFFPLIELNKVYYFTKGHLKTANKQYTAVKNDYEITFHNETSVVPCEDAQHLPSVQFEF
VPISDLENTCKDSIIDIIGVCKSYEDSTKITVKSTNREVSKRNVHLMDTSGKMVTATLWG
DEAERFDGSRQPVVAIKGARVSDFGGRSLSVLASSTVVVNPDSPEAFKLRGWFDSEGQLL
ECTSISDLRGGPTIGGNTNWKTLHEAKSENLGQGDKADYFSCVGTVVFLRKENCMYQACP
SQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADCQENQWVTCFQESAEVILGQ
NAAFLGELKEKNEQAFEEVFQNANFSSYEFRIRVKLETYNDESRIKATVLDVKPVNHKEY
SKRLIMNIRKNAVQLG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcggctgagcgagggggccatcgcggccataatgcagggagagaataattta
aagcctgtcctccaagtcattaacatccgtgccatagccacaggaaatgggccacctcgt
taccgtgtgctgatgagcgatggggtgaacacactttcctctttcatgttggctacacag
ctgaactctctaattgaagaggagcgcttgtctgcccactgtatctgccaggttaacaga
tacattgttaacagcctgaaagatggaaggagagtgattatattgatggatttagatgtt
ctgaaaacagctgatgtggttggtgcaaatattggcaatccagtaccgtacaatgaagga
caggggcaccagcagcaacgttcctcagttccagcagccagcccaacacacagcaaacca
cagcagcagaatggaaattcagcagtaggccccactactactaagtaccatggcccctca
aagcagtttggtaaagcaggtggtactagcttcttgagcacccctggtggatcacagtcc
aaagtggtaccaattgccagtctgaacccataccaatccaaatggaccatttgtgctcgt
gttactcagaaaggccaggttcgcacatggagcaactcccgtggtgaaggaaagctgttc
tctatggagctggttgatgaaagtggtgaaattagagctactgctttcaatgatcaagtg
gacaagttctttcccctcattgaattgaacaaggtgtattacttcaccaaaggccatctg
aagactgctaacaagcagtacacagctgtgaaaaatgactatgagatcacattccataat
gagacttctgttgtaccctgtgaggatgctcagcaccttccttcagttcagttcgagttt
gtgcccatctctgacttggagaacacatgcaaagactcaattatcgacataattggagtc
tgtaagagctatgaagacagcactaaaattacagtgaagtctaccaatagagaggtgtcc
aagaggaatgtgcatttgatggatacatcggggaagatggtgacagctactctttgggga
gatgaggctgaaagatttgatggttctagacaacctgtggtagccatcaaaggagccaga
gtctctgattttggtggccggagtctctctgtcctggcctccagcacagtcgtggtgaac
ccagatagtccagaagcatttaagctccgaggatggtttgactctgaagggcagcttttg
gaatgtacctcaatctctgatctgagaggtggaccaacaattgggggaaataccaactgg
aaaactttgcatgaagctaaatctgaaaatttgggacaaggagataaggcagattatttt
agctgcgtgggcacagtggtattcctgcgcaaagagaattgcatgtatcaggcatgtccc
tctcaggactgcaataaaaaagtgatagaccaacaaaatggactgtatcgctgtgagaaa
tgcgatcgcgagttccccaacttcaagtatcgcatgatactctcggtgaacattgcagac
tgtcaggagaatcagtgggtgacttgttttcaggagtcagcagaggtcattcttgggcaa
aatgctgctttcttgggagaactgaaagaaaagaatgagcaggcatttgaggaagtgttc
caaaatgccaacttcagctcatacgagttcaggatcagagtcaagttggagacttacaat
gatgaatctcgtattaaggctacagtactggatgtgaagcctgtgaaccacaaagaatac
agcaagaggctgatcatgaacatcagaaaaaacgcagtacagctaggttga
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