Caretta caretta (Loggerhead turtle): 125624204
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Entry
125624204 CDS
T09292
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccay04515
]
125624204
Cell adhesion molecules [BR:
ccay04515
]
Cadherins
Cadherin related
125624204
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
ICAT
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Glyco_hydro_16
EphA2_TM
Toxin_R_bind_N
PFF1_TM
V_ATPase_I
Cadherin_C_2
Zip
Motif
Other DBs
NCBI-GeneID:
125624204
NCBI-ProteinID:
XP_048680547
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All DBs
Position
18:12860102..13017386
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AA seq
1009 aa
AA seq
DB search
MNREGVPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI
DQVNKHKPWIETTYHGIVTENDNTVLLDPPLIALDKDAPLRFAESFEVTVTKEGEICGFK
IHGQNVPFDAVVVDKSTGEGIIRSKEKLDCELQKDYTFTIQAYDCGKGPDGANAKKSHKA
TVHIQVNDVNEYAPVFKEKSYKATVIEGKRYDNILKVEAVDADCSPQFSQICTYEIVTPD
VPFAVDKDGYIKNTEKLNYGKEHQYKLTVTAYDCGKKRAAEDVLVKISIKPTCKPGWQGW
SKRMEYEPGTGSLALFPNIHLETCDEPITSIQATVELETNHIGKGCDRDTYSEKSLHRLC
GVSSGTAELLPPPSSTANWTIGLPTDNGHDSDQVFEFNGTQAVKIPDGIVTVNLKEPFMI
SVWMRHGPSTKEKETVLCNSDKTDMNRHHYSLYVHNCRLVFLFRQDPSEGKTYKPAEFHW
KLNQVCDKEWHHYVLNVEFPTVTLYVDGVSYDPFPVTEDYPLHPSKIETQLVVGACWQEY
TGNENDNETVPETSAGGELHMAQFFRGNLAGLMIRSGKLENKKVIDCLYTCKEGLDLQIA
DGIGKGMKINVNPSQSTLTLEGDDIDRFDKAMQHISYLNSRQFPTPGIRRLKITSNVKCF
NEEACIAIPFVDGYIMVLQPEEPKISLSGINHFARSASEFESPEGVSLFPELRIISTITR
EVEPEGEGDEDPTVQESLVSEEIMHNLDTCEVTVLGEELNQEQESLEVDMTQLQQKGIEM
SSSNLGMIITGVDTMASYEEVLHWIRYRNWHTVSLFDRKFKLVCSELNGRYVSNEFKVEV
NVIHTANPVDHANHIAMQPQFVHPVHHTFVDLSGHNLANPHPFSVVPSTATVVIVVCVSF
LVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSSEEEEEE
EESEDGEEDDDITSAESESSEEEEGEREEDQQNVNRQQQLEWDDSTLSY
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtgagggcgtccccgggaagagtccggaggagatgtacatccaacagaaagtg
agagttctgctcatgcttaggaagatgggatcaaatttgactgccagtgaagaggaattc
ttgcggacgtatgcaggtgtagtgaatagccaacttagccagcttcctcagcactctatt
gatcaggttaacaagcacaagccatggattgaaacgacatatcatggtatagttacagaa
aatgacaacacagtactcctggatccccccttgatagccctggataaagatgcgcctctg
cggtttgcagagagttttgaggtgacagtcaccaaagaaggtgagatttgtggatttaaa
attcatgggcaaaatgtcccctttgatgctgtggtagtggataaatccactggtgaggga
ataatacgctctaaagagaaacttgattgtgaactacagaaggactacacattcaccatc
caggcctatgattgtggaaaaggaccagatggcgctaatgcaaaaaaatcccacaaagca
acagtacatattcaggtgaatgatgttaacgagtatgctccagtgtttaaagagaagtcc
tataaagcaacagttattgaggggaagaggtatgacaacatcctgaaagtagaagctgtg
gatgcagattgttctccccagttcagccagatatgcacctatgaaattgtaactccagat
gttccctttgctgttgacaaagatggttatataaaaaatacagaaaagttaaactatggc
aaggagcaccaatataagcttacagtgactgcatatgactgtgggaagaaaagagctgct
gaggatgtattggtgaagattagcattaagcctacatgcaagcctggctggcaaggctgg
agcaaaagaatggaatatgagcctgggactggttctctggctctattccctaatatacat
ttggagacctgtgatgaacccataacttctatacaagcaacagttgaactagagactaat
catattgggaaaggttgtgacagagatacttactctgagaaatcccttcacagactctgt
ggtgtttcctctggcacagctgagctgcttccccctccaagtagcactgctaactggaca
ataggacttcctactgataatggccatgacagtgaccaagtctttgaatttaatggcact
caagctgtgaagattccagatggcattgtcacagtcaatctaaaagagccctttatgatt
tcggtgtggatgaggcatgggcctagtaccaaggagaaggagacagtactctgcaattca
gacaaaacagatatgaaccggcaccactactctctttatgtacacaattgccgacttgtt
ttcctcttccgccaagatccttcagagggaaaaacttacaaacctgcagaattccactgg
aaactgaaccaggtgtgtgacaaggaatggcatcattatgtcctcaatgttgaatttcca
acagtgacgctctatgtagatggagtttcatatgatcctttcccagtgactgaggattac
ccactacatccttccaagatagaaactcagctggtagttggagcatgttggcaagaatat
acaggaaatgaaaatgacaatgaaactgtgcctgaaacatctgcaggtggcgaactccac
atggctcagtttttccgaggcaatctggccggattaatgatccggtctggtaaactggag
aacaagaaggtgatagactgcctctatacctgcaaggaaggattagatttgcaaattgca
gacggcattggcaaaggcatgaagattaatgtgaatcccagccagtcaacattgaccttg
gaaggggatgatattgacaggtttgacaaagccatgcaacatatttcctacctgaattcc
cgccagttcccaacacctggaatccggaggctcaaaatcaccagcaatgtcaagtgtttc
aatgaagaagcctgcattgccattccctttgtggatgggtatataatggtcttgcagcct
gaggaacccaagatcagcttgagtggcatcaaccattttgcccgttctgcctcagagttt
gagagtccagagggagtttctctcttccctgagcttcgcataatcagcaccatcactcgg
gaggtggaaccagagggagagggagatgaggatcctacagtccaagaatctttggtatca
gaggaaatcatgcacaacttggatacatgtgaggtcacagtgctaggagaggagctaaat
caggagcaggaaagcctcgaggttgacatgacacagttacagcagaagggcattgagatg
agcagctccaaccttggcatgatcatcacaggtgttgatactatggccagctatgaggag
gttttgcactggatacgctacagaaactggcacactgtctccctgtttgaccgaaagttc
aagttggtctgttctgagcttaatggtcgctatgtcagcaatgaatttaaggtggaggtg
aatgttatccatacagctaacccagttgaccatgcaaatcatatagctatgcaaccacag
tttgttcatccagtgcatcacacgtttgttgacctctctggtcacaacctagctaacccc
caccccttttcagttgttccaagtactgctactgttgtcattgtcgtgtgtgtcagtttc
ctggttttcatgattattctgggtgtgttccgaatccgagctgcgcatcagagaacaatg
cgtgaccaggatactggaaaggaaaatgagatggattgggatgactctgccttgacgatt
actgtgaatcctatggagacatatgaggaccagcacagcagtgaggaggaggaggaggaa
gaagaaagtgaagatggagaggaagatgatgatatcactagcgcagagtctgaaagcagt
gaggaggaggaaggggagcgggaagaggaccaacagaatgttaacagacagcaacagctg
gaatgggatgactctacactcagctattga
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