KEGG   Caretta caretta (Loggerhead turtle): 125624685
Entry
125624685         CDS       T09292                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay03082  ATP-dependent chromatin remodeling
ccay03083  Polycomb repressive complex
ccay04110  Cell cycle
ccay04330  Notch signaling pathway
ccay04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125624685 (HDAC1)
   03083 Polycomb repressive complex
    125624685 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    125624685 (HDAC1)
   04350 TGF-beta signaling pathway
    125624685 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    125624685 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccay03036]
    125624685 (HDAC1)
Enzymes [BR:ccay01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     125624685 (HDAC1)
Chromosome and associated proteins [BR:ccay03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     125624685 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     125624685 (HDAC1)
    BRAF-HDAC complex
     125624685 (HDAC1)
    REST complex
     125624685 (HDAC1)
    SHIP complex
     125624685 (HDAC1)
    MiDAC complex
     125624685 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     125624685 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125624685 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    125624685 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 125624685
NCBI-ProteinID: XP_048681792
LinkDB
Position
19:complement(6675806..6697960)
AA seq 480 aa
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTASFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVALQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEDEEDPDKRISMRSADKRIACDEEF
SDSEDEGEGGRKNVANFKKSKRVKAEDDKEEEEKKDEKEEEKAKEEKAEPKGVKEETKSA
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggcgctgacacaggggaccaagcggaaagtctgttactactatgacggggatgttgga
aactactattatggccagggccatccaatgaaaccccacaggatccgaatgacccacaac
ctactgctgaactacggcctttacagaaaaatggagatctatcgcccccacaaagcaaat
gcggaagaaatgaccaagtatcatagtgatgactacattaaatttctgagatctattcgc
cctgataacatgtctgagtacagcaagcagatgcagagattcaatgttggggaagattgc
ccggtgtttgatgggttgtttgaattttgtcagctgtctgcaggaggctctgttgccagc
gctgtgaagctgaacaagcaacagacagatattgctgtgaattgggcaggaggccttcac
cacgccaagaaatcggaggcttctggattctgttatgtcaacgacattgtgttagccatc
ttggagctattaaagtaccaccagagggtgctgtatattgacattgatattcaccatgga
gatggcgtggaggaagccttttacaccacagaccgtgtcatgactgcatcctttcataag
tacggagaatacttcccaggaacaggggatctgcgggatattggtgcaggcaaaggcaag
tattatgctgtcaactatcctctccgggatggaattgacgatgaatcctatgaggcgata
tttaagccggtgatatctaaagtgatggagacgttccagcctagtgcagttgccttacag
tgtggatcggattctctgtcaggggacagattgggctgttttaatctgaccatcaaaggt
catgccaagtgtgtggagttcgtaaagagttttaacttgcctatgctgatgctaggaggg
ggtggctacacaatccgcaacgtggctagatgctggacttatgagactgctgtggctttg
gacacggaaataccaaatgagcttccatataatgactattttgaatactttggaccagac
tttaagctccacatcagtccttcgaacatgaccaaccagaacaccaatgagtatcttgag
aagattaagcagcggctatttgagaatctgcgcatgctccctcatgcccctggtgtccag
atgcagccaattcctgaggatgctgtgcaggaggacagcggagatgaagatgaagaggat
cctgacaaacgcatttcaatgcgctctgctgacaagagaatagcctgtgatgaagaattc
tcagactctgaagatgaaggggaaggtggtcgcaaaaatgttgccaattttaagaagtca
aagcgtgtaaaagcagaagatgataaggaggaggaggagaagaaagatgagaaagaagag
gaaaaagccaaagaggagaaagcagaacccaaaggggtaaaggaagagactaaatcggcc
taa

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