Caretta caretta (Loggerhead turtle): 125624734
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Entry
125624734 CDS
T09292
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
ccay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125624734 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
125624734 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125624734 (PABPC4)
03041 Spliceosome [BR:
ccay03041
]
125624734 (PABPC4)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125624734 (PABPC4)
mRNA cycle factors
Stress granule specific factors
125624734 (PABPC4)
Spliceosome [BR:
ccay03041
]
Complex C
Other components
Complex C specific factors
125624734 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
125624734
NCBI-ProteinID:
XP_048681878
LinkDB
All DBs
Position
19:complement(7672997..7693846)
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AA seq
629 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPTGNAQASRGLPAA
QRVGVATAAQNLAPRPPVTAPAPRAVPPYKYASTVRSPHPAAQPLQAPQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaatacggctgctagtagctacccgatggcgtcattgtatgtgggcgacctgcaccct
gatgtcaccgaggccatgttatatgagaagttcagccctgctgggcctgtactctccatc
cgagtctgcagggatatgatcacccgtcgctccctgggatatgcctatgtcaacttccag
cagccagctgatgctgagcgtgctctagacaccatgaactttgatgtgatcaaaggcaaa
cccatccgcattatgtggtctcagcgggacccctctctgaggaagtcaggggttgggaat
gtcttcatcaagaatctggacaaatccatagacaacaaggcactttatgacacattctca
gcatttgggaatatcttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagacagagccatcgagaagatgaatggc
atgctgctaaacgaccgcaaagtatttgttgggagattcaagtcacgtaaggagcgggag
gctgagctgggagccaaagcaaaggagttcaccaatgtttatattaaaaattttggggat
gacatggatgatgagagactaaaggagctcttcagcaaatacggcaagacactgagtgtt
aaggtgatgacggatcccactggaaagtccaaaggctttgggtttgtgagcttcgaaaaa
catgaagatgccaacaaggcagtggaagaaatgaatggaaaggatattaatggaaaaatg
gtatttgtaggccgggcacagaagaaagtagagcgccaggcagagctgaaacggaagttt
gagcagctgaaacaagagagaatcagccggtaccagggcgttaatctgtacattaagaac
ctagatgacactattgatgatgaaaaactgaggaaggagttttcgccttttgggtctatt
acaagtgccaaggtgatgctggaggatggacgaagcaaagggtttggcttcgtctgcttt
tcctctccagaagaagctaccaaagctgtgactgagatgaatggccgtatcgtgggctcc
aagcccttgtatgttgcgctggcgcagaggaaagaggagcgaaaggcccacctcactaat
cagtatatgcagcgtattgctggaatgagagccctgcctgccaacacaatcattaaccag
ttccagccagctgctggggggtacttcatgcctgctgtgccccaggctcagagcagacca
acttactatgcacccaatcagatgacgcagatgagacctaacccacgctggcagcaaggg
gggagacctcaaggattccaaggaatgccgaatgccatgcgccagtccggaccgcgccca
gcactgcgccatctggcgcctactggcaatgctcaggcctctcgtggccttcctgctgcc
cagagagttggcgtcgccactgcagctcagaatttagctcctcgtccgcctgtaaccgcc
ccggctcccagagcagttcccccttataaatatgcctcaactgtccgcagcccacaccca
gcagcacagcctttgcaggcacctcagcctgcagtacacgtacagggacaggagccttta
actgcttccatgctagctgctgcccctccccaggagcagaaacagatgctgggagaacgt
ttattccccctgatccaagctatgcaccccagccttgcagggaagatcacaggaatgcta
ctagagattgacaattcagagctactgcacatgctggagtctccagaatccctccggtca
aaggtggaggaggctgttgcagtgttgcaggctcaccaagccaagaaagaagctgcccag
aaggtgggcgtggttgctgctacctcttaa
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integrated database retrieval system
