Caretta caretta (Loggerhead turtle): 125625329
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Entry
125625329 CDS
T09292
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125625329 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125625329 (DDX6)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125625329 (DDX6)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125625329 (DDX6)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125625329 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
125625329 (DDX6)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125625329 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
125625329
NCBI-ProteinID:
XP_048683166
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All DBs
Position
21:complement(18417696..18445366)
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AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHTEPVDD
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcagaatgggcag
ctgagaggccctgtaaaaccaagtgggggcccaggaggtggggggacacagactcaacaa
cagatgaatcagctgaaaaacaccaacacaatcaataatggcactcaacagcaagcacag
agtatgaccaccgctattaaacctggtgatgactggaagaagactttaaaactccctcca
aaagatctgagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtctgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagtattcccattgctttatctggtagggatattttggctagagct
aaaaatggaacgggcaagagcggagcctacctcattcccttacttgaacggctagactta
aagaaggacaatatacaagcaatggtgattgttcccactcgagaactagcattgcaggtc
agtcagatctgtatccaggttagcaaacacatgggaggtgccaaagtgatggcaacaaca
ggaggaaccaatctgcgtgatgacataatgaggcttgatgatacagtgcatgtggtgata
gctacccctggaagaattttggatctcatcaagaaaggagtagcaaaagttgaacatgtc
cagatgatagtattggatgaggcaaataaattgctatctcaggattttgttcaaataatg
gaggacattattcttacgctacctaaaaacaggcagattttgctctactcagccactttc
ccacttagtgtacagaagttcatgaattcccatttgcagaaaccctatgagattaacttg
atggaggaattgaccttgaagggagttacccagtactatgcctatgtaactgagcggcag
aaagtacactgcctcaatacgctattctccaggctccagattaaccagtcaatcattttc
tgcaactcctcacaacgggttgaactgctagccaagaagatctcccagctgggctattcc
tgcttctatatccatgctaaaatgaggcaggaacaccgtaatcgtgtgttccacgatttc
cgaaatggcttatgccggaatcttgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgtggtgataaactttgattttccaaagctggcagagacgtatctccat
cgtattggcagatcaggtcgctttggtcacctgggcctggccatcaacttgatcacctat
gatgatcgattcaacctgaaaagtattgaggagcagttgggaactgaaattaaacccatc
ccaagcaacattgacaagagcctgtatgtggcagaataccatactgaacctgtagatgat
gagaaaccttaa
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