Caretta caretta (Loggerhead turtle): 125625522
Help
Entry
125625522 CDS
T09292
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04140
Autophagy - animal
ccay04142
Lysosome biogenesis
ccay04148
Efferocytosis
ccay05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
125625522
04140 Autophagy - animal
125625522
04148 Efferocytosis
125625522
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125625522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccay04131
]
125625522
Membrane trafficking [BR:
ccay04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125625522
Hops complex
125625522
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PEP5_VPS11_N
Porphobil_deam
VPS11_N
Porphobil_deamC
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_RSE1_2nd
MGS
Beta-prop_EML_2
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
125625522
NCBI-ProteinID:
XP_048683642
LinkDB
All DBs
Position
21:18687826..18751470
Genome browser
AA seq
723 aa
AA seq
DB search
MAAYLQWRRFVFFDRETVKEPAGPDGGGAGGAKPFALPPGITVCDSGRGSLVFGDMEGQI
WFLPRSLQLSSFQAYKLRVTHLYQLKQHSILASVGEDEEGINPLVKVWNLEKRDGGNPLC
TRIFPAIPGNKPTVVSCITVHETLNFMAIGFADGSVVLTKGDITRDRHSKTQILHEGNYP
VTGLAFRQSGKITHLFVVTTENIQTYMLSVKDYPRLELDTHGCGLRCSTLSDPSQDLQFI
VAGNECVYLYQPDERGPCFAFEGQKLIVHWYRGYLVIVSKDRKSSPKSEFAGSDPQNSDK
QILNVYDLCNKFIAYSSVFDDVVDVLAEWGSLYVLTRDGKIHALQERDTQTKLEALGLEK
SIAMENKTLRSTQDENGLKNRVIRVGTRKSQLARIQTDSVVEMLRKRYLSLHFEIVAMST
TGDKILDTALSKIGEKSLFTKELENALERNEVDLVVHSLKDLPTSLPPGFTIGAICKREN
PHDAVVFHPKNYGKTLNSLPEKSVIGTSSLRRAAQLKRRFPQLEFRDIRGNLNTRLKKLD
EKDNFSAIILAAAGLRRMGWENRIGQILNPEDCLYAVGQGALAVEVRARDEEILDMVSAL
HDAETVLCCIAERAFMRHLEGGCSVPVAVSTMLKDSQLYLTGAVYSLDGSDSLKDTMQTG
VNYPQQNQEGPNDDTQYVGITAKKIPRHAQEAAENLGVELASLLLSKGAKHILSVARQLN
DAR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttacctgcagtggcgccgcttcgtgttctttgacagggagacggtgaaggag
ccggccgggcccgacgggggcggagccggcggagcgaagcccttcgcccttccgccgggc
atcaccgtctgcgactcgggcagaggcagcctggtttttggggatatggaaggtcagatc
tggttcttgccacgctcccttcagctgagcagtttccaggcttacaagctgagggtgact
cacctgtaccagctgaagcagcacagcatcttggcttctgttggtgaagatgaagaaggc
attaacccgctggttaaagtctggaacttagagaaacgagatggtgggaatcctctttgc
acaaggattttcccagcaataccgggtaacaaacctacagttgtgtcctgcataactgtc
catgagactcttaacttcatggctatcggctttgcagatggaagcgttgtgcttacaaaa
ggggacatcacacgagaccgacacagtaagacccagatcttacatgaaggcaattaccca
gtcactggccttgccttccgccagtctgggaaaatcacccacctttttgttgtcaccacg
gagaacatccagacctatatgctgtcggtgaaagattatcctcgtctggagctggacacg
catggttgcggtttacgctgctccacgctcagcgacccctcccaggacctccagttcatt
gtggcaggaaacgaatgtgtgtatctgtaccagccagatgagcgtggcccctgctttgcc
tttgagggacagaagttgatcgttcactggtatcggggatacctcgtcatcgtttccaag
gaccggaagagctctccaaaatcagagtttgctgggagcgacccgcagaactccgacaag
caaatcttgaatgtctacgacctatgtaacaagttcatcgcgtacagctcggtcttcgat
gacgtggtggatgtcttagcagagtgggggtctctctacgtgctgactagagatgggaag
atccatgcgcttcaggagagggatacgcagaccaaacttgaggcattggggttggaaaag
tccatagcaatggagaacaagacactgaggagcactcaggatgaaaatggcctgaaaaac
agagttatccgagtgggcaccaggaagagtcagctggcccggattcagacagacagtgta
gtggaaatgcttcgcaagcgatacctcagccttcattttgagattgttgccatgtcaaca
actggagacaagatcctggacacggctctttccaagattggagagaagagcctctttacc
aaggagttggaaaatgcactggaaagaaatgaagttgacctggttgttcactccttgaag
gacctgccaacttcgctcccgcctggcttcaccattggggccatctgcaaaagggaaaat
ccccatgatgctgtcgtttttcatcccaagaactatgggaaaaccctcaacagccttcct
gaaaagagcgtgattggaaccagttcacttcggcgagcagctcagctcaaacggcggttc
cctcagctggaatttagggatattagaggaaatttaaacacccgcttgaaaaagctggat
gaaaaggacaacttcagtgccataattctggctgctgctggactgaggaggatgggctgg
gagaatcgtattggtcagatattaaaccctgaagattgcctttatgctgttgggcagggt
gccttagcagtagaggtccgagctagagacgaagagatattggatatggtatccgccttg
catgatgcagaaacggtgctgtgctgcattgccgagagagcctttatgagacacttggag
ggtggatgtagcgttcctgtagcagtcagtaccatgctgaaagactcccagttgtatttg
acaggagctgtttacagcttggatggatcagatagcctgaaggacactatgcagactggt
gttaactatccacagcagaatcaagaaggacccaatgatgatacacagtatgttggcatc
acagccaagaagattcctcgtcatgctcaagaggctgcagaaaacctgggtgtcgaacta
gccagcttactgctgagcaagggtgctaagcatatcctcagtgttgcaaggcagctcaat
gatgcccgatag
DBGET
integrated database retrieval system
