Caretta caretta (Loggerhead turtle): 125626300
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Entry
125626300 CDS
T09292
Symbol
POLB
Name
(RefSeq) DNA polymerase beta isoform X1
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125626300 (POLB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125626300 (POLB)
Enzymes [BR:
ccay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
125626300 (POLB)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
125626300 (POLB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
125626300 (POLB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
NTP_transf_2
Cdd1
IMS_HHH_1
DUF3900
Motif
Other DBs
NCBI-GeneID:
125626300
NCBI-ProteinID:
XP_048685038
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All DBs
Position
23:99864..147835
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AA seq
376 aa
AA seq
DB search
MHCISSFLPRVWGSGRRSPRLIRSSFPSSYPAWQLPGTEAAMSKRKAPQESPNAGITDFL
SELANYERNVNRAIHKYNAYRKAASVISKYPSKIKSGAEAKKLEGVGAKIADKIDEFLST
GKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNEHKLNHHQRIG
LKYFEDFEKRIPREEMLQMQEIVLKEVKKLDPEYIATVCGSFRRGAESSGDMDILLTHPS
FTSESTKQPKLLHQVVEQLKKIHFVTDTLSKGDTKFMGVCQLTSEEDGTNYPYRRIDIRL
IPKDQYYCGVLYFTGSDIFNKNMRTHALEMGFTINEYTIRPLGVTGVAGEPLPVESEKDI
FDYIQWKYREPKERSE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcactgcatctcgtcctttctgccccgcgtgtgggggtcggggaggaggagtccgcgg
ttaatccgctcctccttcccctcatcctacccggcctggcagctgcctgggaccgaggcc
gccatgagcaagcggaaggcgccgcaggagagccccaacgcggggatcacggacttcctg
agtgagctggcgaactacgagaggaacgtgaacagagccatccacaagtacaacgcgtac
agaaaagcagcttctgtaatatccaagtatccaagcaagataaaaagtggagctgaagca
aagaagctggaaggagtaggggctaaaatagctgacaagatcgatgagtttttatccact
ggaaaactacgtaagcttgaaaagattcgacaggatgatacaagctcatctatcaatttc
ttgacccgagttagtggcataggcccttctgcagctaggaagcttgtagatgaagggata
aagacattggaagatctaaggaaaaatgaacacaagctgaatcatcatcagcgaattggg
ctaaaatattttgaagactttgagaaaagaatccctagagaagagatgttacagatgcag
gaaattgtattgaaagaggttaagaaactggaccccgaatatattgctacagtctgtggc
agtttcaggcgaggtgcggaatcaagtggggatatggatattctcctgacccatccaagt
tttacttctgaatcgaccaaacagccaaagcttttgcaccaagttgtagaacaattgaaa
aaaatccactttgtcactgacacattgtcaaagggtgatacgaaattcatgggtgtatgt
cagttgacaagcgaagaagatggaaccaattatccatacaggagaatcgatatcaggctg
atccccaaggatcagtattattgtggagtactgtacttcacaggcagtgacatattcaat
aagaacatgagaactcatgccctagaaatgggcttcacaatcaacgagtacacaatccgg
cccttgggagttactggagttgctggggagcccctcccagtagagagtgaaaaggatatc
tttgactacatacagtggaagtatcgagagccaaaagaacggagtgaataa
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