Caretta caretta (Loggerhead turtle): 125626507
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Entry
125626507 CDS
T09292
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2 isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125626507 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125626507 (USP39)
Spliceosome [BR:
ccay03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
125626507 (USP39)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
125626507
NCBI-ProteinID:
XP_048685510
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Position
23:15683005..15708749
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AA seq
580 aa
AA seq
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MRLLLHMRVGEGKGAGGLWARVRSSAWTRPGMSGRVKREREARAPPRSSGRVRREPAASR
GSSRGKREAEPERVRVKREPEDGPPRAKREREAEAEEEPEPEPAVRYGRFDPEDRRSRHC
PYLDTINRSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFL
NLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIV
GLNNIKANDYANAVLQALSNVPPLRNYFLEEENYRNIKRPPGDIMFLLVQRFGELMRKLW
NPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIV
TDVFQGSMRIFTKKLPHPDLPAEEKEQLLQNDEYQETMVESTFMYLTLDLPTAPLYKDEK
EQLIIPQVPLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVE
KNPTIVNFPITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPTEGSYRIHVLHHGTGK
WYELQDLQVTDILPQMITLSEAYIQIWKRRDEDETNQQGA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgttgctgcacatgcgggtgggggagggcaaaggcgccgggggcctgtgggcg
cgcgtgcgcagcagcgcttggacgcggcccgggatgtccggccgggtgaagcgggagcgg
gaggcccgggcgcccccgcggagctcgggccgggtgaggcgggagccggcggcgtcgcgc
ggctcctcccgagggaagcgcgaggcggagcccgagcgggtccgggtgaagcgcgagccc
gaggacgggccgccccgggccaagcgggagcgcgaggccgaggccgaggaggagccggag
ccggagccggcagtgagatatggccgatttgaccccgaggaccggcgcagcagacactgc
ccatacctggacactattaacaggagtgttctggactttgactttgagaagctgtgctcc
atctcactctcgcatataaatgtctatgcttgcctggtgtgtgggaaatacttccagggc
cgtgggttgaagtctcatgcttacattcacagcgtacagttcagccatcacgtctttctg
aacctccacacgctcaagttctactgtctgccagacaactatgagatcattgactcctcg
ctggaggacatcacttatgtgttgaagcccactttcaccaagcagcaaattgccaatttg
gacaaacaagccaaactttcgcgggcatatgatggcaccacttacctgcctggcattgtg
gggctgaacaacatcaaggccaatgactatgccaatgcagtactccaggccctgtctaac
gtcccacctctgcggaactacttcctggaggaggagaactacaggaacatcaagcgccca
ccaggggacatcatgttcctgctcgtccagaggtttggagagttgatgaggaagctgtgg
aacccccgaaatttcaaggctcacgtctctccccatgaaatgctgcaggccgtggtcctg
tgcagtaagaagaccttccagattaccaagcaaggtgatggcgttgacttcctctcctgg
tttctaaatgccttgcactctgctcttggtgggacaaagaagaagaaaaagaccattgtg
accgacgtgttccaaggctccatgcggatctttaccaaaaagcttccacaccctgacctg
ccagcagaggagaaggagcagctgctgcaaaatgacgagtaccaggagacaatggtggaa
tccaccttcatgtacctgaccctcgacctccccactgctccgctgtacaaggatgagaag
gagcagctgatcatcccccaggtgccgctcttcaacatcctggccaagttcaacggcatc
actgagaaggagtataaaacctataaggagaatttcctcaagcgtttccagctgaccaag
ctgcctccctacctcatcttctgcatcaagaggttcaccaagaacaacttctttgtggag
aagaaccccactatcgtcaacttccccatcacgaacgtggatctccgggagtacctgtct
gaggaggtgcaggccgtgcacaagaacaccacctatgaccttatcgccaacatcgtgcat
gatgggaaacccaccgagggctcctacagaattcacgtgctgcatcacggcacgggcaag
tggtatgagctgcaagacttacaggtgaccgatatcctgccccagatgataacgctctca
gaggcctatatccaaatctggaagaggcgggatgaggatgagaccaaccagcagggggcg
tga
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