Caretta caretta (Loggerhead turtle): 125626967
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Entry
125626967 CDS
T09292
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03018
RNA degradation
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125626967 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
125626967 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125626967 (LSM4)
03041 Spliceosome [BR:
ccay03041
]
125626967 (LSM4)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125626967 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
125626967 (LSM4)
Spliceosome [BR:
ccay03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125626967 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125626967
NCBI-ProteinID:
XP_048686514
LinkDB
All DBs
Position
25:complement(1618616..1627094)
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AA seq
138 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQQKQQKGRGGGGAGRGVFGGRGRGIP
GSGRGQQEKKPGRQSAKQ
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttatccctgttgaagactgcacagaaccaccctatgttggtggaattgaaa
aatggtgaaacgtacaatggtcacctagtgagttgcgataactggatgaacatcaaccta
agagaagtcatctgcacatcaagggacggagacaaattctggagaatgccagagtgttac
attcgcggcagcacaattaaatatttgcgtatcccggatgaaatcattgacatggtgaag
gaggaggtggtgtcaaagggcagaggccgtggtggcatgcagcagcagaaacaacagaaa
ggccgaggaggtggaggtgctgggcgaggagtgtttggtggtcgtggccgagggatacca
gggagtggaagagggcagcaggaaaagaagccaggcaggcaatctgcaaagcaatga
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integrated database retrieval system
