Caretta caretta (Loggerhead turtle): 125627929
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Entry
125627929 CDS
T09292
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta isoform X1
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccay01001
]
125627929 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccay04121
]
125627929 (TRIM28)
Enzymes [BR:
ccay01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125627929 (TRIM28)
Protein kinases [BR:
ccay01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
125627929 (TRIM28)
Ubiquitin system [BR:
ccay04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125627929 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_5
PHD
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
125627929
NCBI-ProteinID:
XP_048688504
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All DBs
Position
27:6263403..6317634
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AA seq
924 aa
AA seq
DB search
MSGSAASAEAGGPGGEKRPEALELLEKCGVCRERLRAEREPRLLPCLHSVCRECLRAEPA
AAADGEAANNKEGQVVDCPVCKHQCYLKDIVENYFLRDSGVEAATDSKDANQCCTSCDDN
APATSYCVECSEPLCETCVEAHQRVKYTKDHTVRSTGPSKSKEGERTVYCSVHKHEPLVL
FCDTCDTLTCRDCQLNAHKDHQYQFLEDAVRNQRKMLAALVKRLGDKHANLQKSTKEVRT
SIRQVTDVQKRVQVDVKMAILQIMKELNKRGKVLVNDAQKVTEGQQEKLERQHWAMTKLQ
RHQEHILRFASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPQGDMKFQWDLNAWT
KSAETFGTIVSERSGTLQAAAPNAQIQRANATGPAAAGGGVKQVSGTPQVLAPLMNVPPM
VPNRPEAAVSQSQPPPLQPPVQPTRILTAPVVKSGAGSTYVQPMQLQLVQPRGLLQMNGQ
QQVMGQLVLLPQVNGTQGVQQVSVQSTVVSKGQLAPGALLQPMVSPNSQADCFISEGSAP
ASSTVQPMDTQEEGIGDLDSTEAHVSGMKRPRPSDGNVMRKVPRVSLERLDLDLTADSQP
PVFKVFPGNSNEDYNLIVIERGAQQAAAQPPSTTLPGTIVKEEQMEAAIDYPAEEPRDTK
PIVLPQDVLAAEGSVSRLISPSGSIGSSLDVTPGQSQEGALESANAAHCRVCRKAGSVVM
CNQCEQCYHLDCHLPALQEIPSQEWKCLLCQELPAPGEEDSTNFSSSEDEGPSKLSPLEQ
RKCERVLLELLCHEPCRPLHRLSTATEGQDTIDLTLIRAKLQEKLSPPYSSSEEFAQDVW
RMIKQFNKLTEDKEDVQSIIGLQRFFEAKWSASFGDRKFSSALVEPIPLDEQRSESGSSF
THRSSPAGSLGEAPAASAGAGEEE
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggctcggcggcctcggccgaggcgggcggccccggcggggagaagcggcccgag
gcgctggagctgctggagaagtgcggcgtgtgccgcgagcggctgcgggccgagcgggag
ccccgcctgctgccctgcctccactccgtctgccgggagtgcctgcgggccgagccggcc
gctgccgccgacggggaggccgccaacaacaaagagggacaagtggtggactgccctgtg
tgcaaacaccagtgttacctcaaggacatagtggagaactacttcctgagagacagcggg
gtggaggcagccacagacagcaaggatgccaaccagtgctgcaccagctgtgatgacaac
gcccctgctaccagctactgtgtggagtgctcagagccactgtgcgagacgtgtgtggaa
gcccaccagagggtgaagtacaccaaagaccacacggtcagatccacaggcccttcgaag
tcaaaagagggtgagcgcacagtctactgctccgtgcacaagcatgagcccctggtgctg
ttctgtgatacctgtgacactctgacctgtcgggactgccagctcaatgcccacaaggat
caccaataccagttcttggaggatgctgtcaggaatcagcgcaagatgctggctgcgctg
gtgaagcgcctgggggacaagcacgccaacctgcagaaatccaccaaggaagtgcgcacc
tcgatccggcaggtgacagatgtgcagaagcgggtgcaggtggacgtgaagatggccatc
ctgcaaatcatgaaggagctcaacaagcggggcaaggtgctggtcaatgacgcacagaaa
gtgaccgaggggcagcaggagaagctggagcgccagcactgggccatgaccaagttgcag
cgccatcaggagcacatcctgcgtttcgcctcctgggccctggagagtgacaacaacact
gccctgctgctttccaagaaactgatctacttccagctgcatcgtgccctcaagatgatc
gtagaccccgtggagccccagggggacatgaagttccagtgggatcttaacgcctggacc
aagagtgcggagaccttcggaacaattgtttcagagcggagcggcaccctgcaggccgca
gcccccaacgcgcagatccagcgtgccaacgccaccggcccggcggcggcaggaggaggg
gtgaaacaggtctccggcactccccaggtactggctcctcttatgaatgtccctcccatg
gtcccgaaccggcccgaggctgctgtctcccagagccagcctccgcctctgcagccgcca
gtgcagcccacccggatcctcacggcccccgtggttaagagtggtgccggcagcacctac
gtacagcccatgcagctccagttggtgcagccccgtggtctcctacagatgaacggccag
cagcaagtcatgggccagctggtactcctgcctcaggtcaatgggactcagggcgtgcaa
caagtctcggtgcagtccactgtcgtcagcaagggacagctggccccaggagccctgctg
cagccgatggtctctcccaacagccaggcagactgtttcatcagtgagggtagcgcccca
gcatcctctactgtgcagcccatggacacccaggaggaaggcattggagacctggacagc
actgaggcccacgtatcgggaatgaagaggcccaggccttcggacggcaacgtcatgcgc
aaggtgccgcgggtgagcctggagcggctggacctggacctgacggccgacagccagcca
cctgtcttcaaggtcttccccggcaacagtaacgaggactacaacctgatcgtcattgag
cgtggggcccagcaggctgctgcccagccccccagcaccaccctgcccggaaccatagtc
aaggaggagcagatggaggcagcgatcgactatccagcagaggagcccagagacaccaag
cccattgtcctgccccaggatgtcctggccgccgagggctccgtgtcccgcctcatctcc
cccagtggcagcattggctccagtctggatgtgacgccaggccagagccaggagggggcc
ctggagtcggccaatgctgcccactgcagagtgtgccggaaggcgggctctgttgtgatg
tgtaaccagtgtgagcagtgctaccatttggactgccacctcccagcgctgcaggagatc
cccagtcaggagtggaagtgcctgctgtgccaggaactgccggcgcctggtgaggaggac
agcaccaacttctccagctcggaagatgagggccccagtaaactctcccccttggagcag
aggaagtgtgagcgtgtcctgctggagctgctgtgccatgagccatgtcggcctctccac
cggctttcgaccgccacggagggtcaggacaccatcgacctgaccctgatccgagccaag
ctgcaggagaagctctccccaccctacagctcctctgaggagtttgcccaggatgtctgg
cggatgatcaagcagttcaacaagctgacagaggacaaggaggatgtccagtccatcatc
gggctgcagcgcttctttgaggccaagtggagcgcctccttcggtgaccggaagttctcc
tctgcgctggtggagcccatcccgctggatgagcagcggagcgagagcggcagcagcttc
acccaccgcagctcccctgccggctccctgggcgaggcccctgctgcctcggcaggcgct
ggggaggaggagtga
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