Caretta caretta (Loggerhead turtle): 125628014 Help Entry 125628014         CDS       T09292                                  Symbol SYMPK Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism ccay  Caretta caretta (Loggerhead turtle) Pathway ccay03015   mRNA surveillance pathway ccay04530   Tight junction Brite KEGG Orthology (KO) [BR:ccay00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     125628014 (SYMPK)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04530 Tight junction     125628014 (SYMPK)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ccay03021]     125628014 (SYMPK)    03019 Messenger RNA biogenesis [BR:ccay03019]     125628014 (SYMPK) Transcription machinery [BR:ccay03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      125628014 (SYMPK) Messenger RNA biogenesis [BR:ccay03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      125628014 (SYMPK)     U7-dependent histone pre-mRNA processing factors      125628014 (SYMPK) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_MROH2B_C PDS5 Cnd1 Adaptin_N INTS7_N Motif Other DBs NCBI-GeneID:  125628014 NCBI-ProteinID:  XP_048688639 LinkDB All DBs Position 27:6917092..6938188 Genome browser AA seq 1288 aa AA seqDB search MTSRAGEGSNARMSIASQFFTQEEGSGTDSMTTSERVVDLLNQAALISNDSKINLLKQVQ ELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLK DENVNVVKKAILAMTQLYKVALQWMVKSKVINDLQEACWEMVSAMASDIILLLDSDNDGI RTHAIKFVEGLIITLSPRMPDSDVPKRHENDISLDRIPKDHPYIKHNVLWEEGKAALEQL LKFMVHPAISSINLTAALGSLASIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRK NLKLHLLSVLKHPSSFEFQAQITTLLVDLGTQQAEITRSMPSLKEPRKRPRDESDPALKK MKMEPPLGEDDEDKDLEQAAAPPPKPSAQTSTHSDTDITAEFLQPLLTPDNVANLVLISM VYLPDTMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGSSPRPPGVEHTKLL KEEPKEEKLVKPESVLIKRRLSSLSQGQAISVLGAQGCVTILLEQEAPQAKRRPEPIIPA TQTRLAGAGGRKKVFRLSDAIKPLTDVQMEKLKLGAVKRILCSERAVACSGAAQARVKIL SSLVTQFDVPLKSEVLAFILDDIRNRLDLAFAWLYQEYNAYLSTFPAGSLDSYDECLIGL LSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSR QFQYLHVLLDLSSHEKDKVRQQAILFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVL FGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVLRVIEQ PIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVR FLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGELLIAL HNIDSTKCDMKSIIKATNLCFGERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMY PRLGGFVMNVLSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLNAVFEKCP ELREPLLAHVRSFTPHQQAHVPNSTMAILEASSKQEVEVKDSQPLEEEEQEPAPLLPRMS QDMIALRLAQEKALKRQLEEEQKLKQPASQPRPAHALAPLPAEEPMDFREEGPEVETPTI FISMQEEEEGSGGDGSLLDSSMEGPLPAKEAKSKEAGASSAADEGAESKPESLTPDEPAP GGPQPVSQPEELPEPGGGSTEQEQKAES NT seq 3867 nt NT seq  +upstreamnt  +downstreamnt atgaccagccgcgcaggggagggcagcaacgcccgcatgagcatcgcctcccagttcttc acccaggaggagggcagcggcaccgacagcatgaccacctcggagcgggtggtggatctg ttaaaccaagctgccctgatcagcaacgactctaaaatcaacctcctcaaacaggtccag gagctaattataaacaaggaccccacgctgctggataacttcctggatgagatcatcgcc ttccaggcggacaaatccatcgaggtgcggaagtttgtcatcggcttcatagaagaggcc tgcaaacgggatatcgagctgctcctgaagctcatcgccaacctgaacatgctgctgaag gacgagaacgtcaacgtggtgaagaaggccatcctcgccatgacccagctctacaaggtg gcgctgcagtggatggtgaagtccaaggtcatcaacgacctgcaggaggcctgctgggag atggtgtcggccatggccagcgacatcatcctgctgctggactcggacaacgacggcatc cgcacccacgccatcaagttcgtggaggggctgatcatcacgctgtcaccccgcatgccc gactcagacgtgcccaagcgccatgagaacgacatcagcctcgaccgcatccccaaggac cacccctatatcaaacacaatgtgttgtgggaggagggcaaggcggccctggagcagctg ctgaagttcatggtgcacccggccatctccagcatcaacctcacagcggcgctgggctcc ctggcctccattgcccgccagcggcccatgttcatggctgaagtgatccaggcctacgag accctgcatgccaacctgccgccgacactggctaagtcccaggtgagcagtgtgcgcaag aacctgaagctgcacctgctgagcgtgctgaagcacccctcgtccttcgagttccaggcg cagatcaccaccctgctggtggacctgggcacccagcaggccgagatcacccgcagcatg cccagcctgaaggagccacgcaagcgcccgcgggacgagagcgacccagccctgaagaag atgaagatggagccacccctcggggaggacgatgaggataaggatctggagcaagcagct gcgccaccacccaagccctctgcccagaccagcacccattcggacacggacatcacggcc gagttcctgcagcccctgctgacgccggacaatgtggccaatctggtgctcatcagcatg gtgtacctgcctgacaccatgcccgcctccttccaagccacctacacccccgtggagtcg gctggcacagacgcccagatcaagcatctcgcccgcctgatggccacccagatgacggct gcagggcttgggccaggctcctctccccgtcctccaggcgtggaacacaccaagctgctg aaggaggagccgaaggaggagaagctggtgaagcccgagagcgtgctgatcaaacggcgc ctgtcctcgctgtctcaggggcaggccatctccgtgctgggggctcagggctgcgtcacc atcctcctggagcaagaggccccccaggccaagcggcgcccagagcccatcatcccggcc acccagaccaggctggcgggcgccggcgggcgcaagaaggttttccgcctgagcgacgcg atcaagccactgacggacgtgcagatggagaagctgaagctgggagccgtgaagcggatc ctgtgctcggagagagccgtcgcttgcagcggggcggcccaggcccgtgtcaagatcctc tcatccctggtgacccagtttgacgtgcccctgaagagcgaggtcttggccttcatcctg gacgacatccgcaaccggctggacctggcctttgcctggctgtaccaggagtacaatgcc tacttgagcacgttccccgccggctccctggacagctacgacgagtgcctcattggcctg ctctctggcctgcaggagaagccagaccagaaggatgggatcttcaccaaggtggtgctg gaagccccactcatcacagagagtgccctggaggtgatccgcaagtactgcgaggatgag agccgcacctacctggggatgtccaccctccgggacctgatcttcaagcgtccgtccagg cagttccagtatctgcacgtgctgctggacctcagctcccatgagaaggacaaggtccgc cagcaggcgatcctcttcatcaagcgcatgtacgagaaggaccagctgcgggagtacgtg gagaagtttgcactgaactacctacagctcctggtgcaccccaaccccccatctgtgctc ttcggcgccgacaaggacacggaggtggctgctccctggaccgaggagaccgtcaagcag tgtctgtacctgtacctggccctgctgccgcagaaccacaagctgatccatgagctggcg tcggtctacacagaggccatcgctgacatcaagcgcaccgtgctgcgggtcatcgagcag ccgatccgcgggatggggatgaactccccggagctgctgctgctggtggagaactgcccc aaaggagctgagaccctggtgacccgctgcctgcacagcctgacagataaagtgccccca tctcccgagctggtgaagcgagttcgtgatctctaccacaagcggctcccggacgtccgg ttcctcatccccgtcctcaacgggctggagaagaaagaggtgatccaggctctgcccaag ctcatcaagctgaatcccatcgtggtgaaggaggtgttcaaccgcctcttggggacgcag cacggcgaagggaattcggccgtgtcccccctgaaccctggggagctgctcatcgccttg cacaacatcgactccaccaagtgcgacatgaaatccatcatcaaagccaccaacctgtgt ttcggcgagaggaacgtctacacgtcggaggtgctggccgtggtgatgcagcagctgatg gagcagagccccctgcccatgctgctcatgaggacggtcatccagtcactgaccatgtac ccacgcctgggtggcttcgtcatgaacgtcctgtcccgcctcatcatgaagcaggtgtgg aagtaccccaaagtgtgggagggcttcatcaaatgctgccagcgcaccaagccccagtcc ttccaggtcatcctgcagctccctccacagcagctcaacgccgtcttcgagaagtgcccc gagctgcgggagccgctgctggcccatgtccgctccttcactccgcaccagcaagcgcat gtccccaactccaccatggccatcctggaagccagcagcaagcaggaggtggaggtgaag gactcccagccgctggaggaggaggagcaggagcccgcgcctctcctcccacgcatgtcc caggacatgatcgctctgcggctggcccaggagaaggcactcaaacgccagctggaggag gagcagaaactgaagcagccagccagccagccgcgccctgcccatgccctggcaccgctg cctgctgaggagccgatggacttccgggaggaggggcccgaggtggagacgcccaccatt ttcattagcatgcaggaggaagaggagggttcaggcggagatgggtccctgttggactcc agcatggaggggcccctacctgcgaaggaagcgaagagcaaggaggcgggagccagcagc gccgctgacgagggagcggagagcaagcccgagagcctcacgcccgacgagccagcaccc ggcgggccccagccggtcagccagcctgaggagctgccagagcccggcggtggcagcacg gagcaggagcagaaagcagagagctga

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