Caretta caretta (Loggerhead turtle): 125628018
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Entry
125628018 CDS
T09292
Symbol
SMC1A
Name
(RefSeq) structural maintenance of chromosomes protein 1A isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04110
Cell cycle
ccay04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
125628018 (SMC1A)
04114 Oocyte meiosis
125628018 (SMC1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccay03036
]
125628018 (SMC1A)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
125628018 (SMC1A)
Meiosis-specific proteins
Cohesin complex and associated proteins
125628018 (SMC1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
SlyX
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
125628018
NCBI-ProteinID:
XP_048688653
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All DBs
Position
27:1337650..1354418
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AA seq
1239 aa
AA seq
DB search
MVRSTEISPLYERWHGPRDPPSHRGGWFRPWDCSRPPHARDRGKSNLMDAISFVLGEKTS
NLRVKTLRDLIHGAPVGKPAANRAFVSMVYSEDGAEDRTFARVIVGGSSEYKINNKVVQL
SEYSEELEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKE
MVKAEEDTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEAE
IEKLNKELGSKNKEIDKDKKRMDKVEDELKDKKKELGKMMREQQQIEKEIKEKDSELNQK
RPQYIKAKENTSHKIKKLEAAKKSLQNAQKQYKKRKGDMDELEKEMLSVEKARQEFEERM
EEESQSQGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKK
VETEAKIKQKLREIEENQKRIEKLEEYIATSKQSLEEQKKLEGELTEEVELAKRRIDEIN
KELNQVMEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAV
TKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLV
IDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISG
GASDLKAKARRWDEKAVDKLKEKKERLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKY
SQSDLEQTKTRHLALNLQEKSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVED
EVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQEK
VHMWEQTVKKDEAEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEI
RKKLGGANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEE
GGAHGEEPVSSSQRTSNMYAREALIEIDYSDLSEDLKDAQAEDEIKQEMNQLQQKLNEQQ
SVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACF
ESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKT
VAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFY
TKAESLIGVYPEQGDCVISKVLTFDLTKYPDANPNPNEQ
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggtgcggtccacggaaatctcccctctttacgagaggtggcacggcccgcgggaccct
ccttcccaccgtgggggatggttcaggccgtgggactgttcccgccccccgcatgcgagg
gacagaggcaagtcaaacctcatggacgccatcagctttgtgctgggcgagaagacgagc
aacctgcgggtgaagacgctgcgggacctgatccacggggcgcccgtgggcaagccggcc
gccaaccgggccttcgtcagcatggtgtactccgaggacggggccgaggaccgcaccttc
gcccgtgtcatcgtggggggctcgtcggaatacaagatcaataacaaagtggtgcagctg
agcgagtacagcgaggagctggagaagctggggatcctcatcaaagccaggaactttctc
gtcttccagggagcggtggagtcgatcgccatgaagaaccccaaggagcgcacggcgctg
ttcgaggagatcagccgctcaggggagctggcccaggagtacgacaagcgcaagaaggag
atggtgaaagccgaggaggacacacagtttaactaccaccgcaagaagaacatcgcggct
gagcgcaaggaggccaaacaggagaaagaggaggcggaccggtaccagcggctgaaggac
gaggtggtgcgggcccaggtccagctgcagctcttcaagctgtaccacaacgaggccgag
atcgagaagctcaacaaggagctgggatccaagaacaaggagatcgacaaggacaagaag
cgcatggacaaggtggaggatgagctcaaggacaagaagaaggagctgggcaaaatgatg
agggagcagcagcagatcgagaaggagatcaaggagaaggactccgagctgaaccagaag
cggcctcagtacatcaaggccaaggagaacacctctcacaagatcaagaagctggaggca
gccaagaagtccctgcagaatgcccagaagcagtacaagaagcgcaaaggtgacatggat
gagctggagaaggagatgctgtcggtggagaaggctcggcaggagtttgaggagcgcatg
gaggaggagagccagagccaggggcgagacctcaccctggaagagaaccaggtgaagaaa
tatcaccggctaaaggaagaggccagtaaaagagctgccacactggcccaggagctggag
aaatttaaccgggaccagaaagcggatcaggaccggctggacctggaggagaggaagaaa
gtggagaccgaggccaagatcaagcagaagctgcgggagatagaggagaatcagaagcgg
attgagaagctggaggagtacatcgctaccagcaagcagtcgctggaggagcagaagaag
ctggagggggagctgacggaggaggtggagctggccaagcggcgcattgacgaaatcaac
aaggagctgaaccaggtgatggagcagctgggcgatgcccgcatcgaccgccaggagaac
agccgccagcagcgcaaggccgagatcatggagagcatcaagcgcctttatcccggctcc
gtgtacgggcggctcatcgacctctgccagcccacacagaagaaataccagattgctgtc
accaaggtgctgggcaagaacatggacgccatcattgtggactcggagaagacgggccgg
gactgcatccagtacatcaaggagcagcggggcgagccggagacctttctccccctggac
tacctggaggtgaagcccacggacgagaagctgcgggagctgaagggggccaaactggtg
atcgacgtgatccgctatgagccgccccacatcaagaaggccctgcagtacgcctgcggg
aatgccctggtgtgtgacaacgtggaggacgcccggcgcattgccttcgggggccaccag
aggcacaagacggtcgccctggacggcaccctgttccagaagtcgggggtgatctccgga
ggcgccagcgacctgaaggccaaggcccggcgctgggacgagaaggccgtggataaactg
aaggagaaaaaggagaggctgacagaggagttaaaggagcaaatgaaggccaagcgcaaa
gaggctgagctgcggcaggtacaatcccaagcccacgggctgcagatgcgcctgaaatac
tcccagagcgacttggaacagaccaagacccgtcacctcgccctgaacctccaggagaag
tcgaagctggagagtgaactggccaactttgggccccgcatcaacgacatcaagcgaatc
atccagagccgggagcgggagatgaaggacctcaaggagaagatgaaccaggtggaggac
gaggtgttcgaggagttctgccgggagatcggggtgaggaacatccgggagttcgaggag
gagaaagtgaagcggcagaacgagattgccaagaaaaggctggagtttgagaaccagaag
acgcggctggggatccagctggatttcgagaagaaccagctgaaggaggaccaggagaag
gtgcacatgtgggagcagaccgtcaagaaggatgaggccgagatcgagaagctcaagaag
gaggagcagcgtcacatgaagatcatcgacgagaccatggcccagctgcaggacctgaag
aaccagcacttggccaagaaatccgaggtcaacgacaagaaccacgagatggaggagatc
cgcaagaagttgggcggggccaacaaggaaatgacccacctgcagaaggaggtgacggcc
atcgagacgaagctggagcagaagcgtagcgaccgccacaacctgctgcaggcctgcaag
atgcaggacatcaaactgcccctctccaagggcaccatggacgacatcagccaggaggag
ggtggggcgcacggcgaggagcccgtcagcagctcccaacgcacctccaacatgtacgcc
cgggaggccctgatcgagatcgactacagcgacctgtccgaggacctcaaggacgcccag
gcggaagacgagatcaagcaggagatgaaccagctgcagcagaagctgaatgagcagcag
agcgtcctccagcgcatcgccgcccccaacatgaaggccatggagaagctggagagcgtc
cgggacaagttccaggagacctccgacgagtttgaggcggcccggaagcgcgccaagaag
gccaagcaggcatttgagcagatcaagaaggagcgatttgaccggttcaacgcctgcttc
gagtccgtggccacgaacatcgatgagatctacaaggctctgtcgcggaacagcagcgcc
caggcgttcctgggcccggagaaccccgaagagccgtacttggatggaattaattacaac
tgcgtggcccctggcaagcggttccggcccatggacaacctgtccggaggggagaaaact
gtagcagccttagcccttctgtttgctatccacagctacaaacccgcccccttcttcgtg
ctggatgaaatcgacgctgcgctggacaacaccaatatcgggaaggtggccaactacatc
aaagagcagtccacctgcaacttccaggctatcgtcatctcgttgaaggaggaattctac
accaaggccgagagcctgatcggggtctaccccgagcaaggggactgcgtgatcagcaaa
gtgttgacctttgacctcaccaagtaccccgatgccaacccgaaccccaatgagcaataa
DBGET
integrated database retrieval system
