KEGG   Caretta caretta (Loggerhead turtle): 125628031
Entry
125628031         CDS       T09292                                 
Symbol
POLR2I
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9 isoform X1
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay03020  RNA polymerase
ccay03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125628031 (POLR2I)
  09124 Replication and repair
   03420 Nucleotide excision repair
    125628031 (POLR2I)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccay03021]
    125628031 (POLR2I)
   03400 DNA repair and recombination proteins [BR:ccay03400]
    125628031 (POLR2I)
Transcription machinery [BR:ccay03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     125628031 (POLR2I)
DNA repair and recombination proteins [BR:ccay03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125628031 (POLR2I)
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_GRF_2 TtuA_LIM_N Zn_ribbon_NrdR
Other DBs
NCBI-GeneID: 125628031
NCBI-ProteinID: XP_048688689
LinkDB
Position
27:8102733..8110511
AA seq 137 aa
MEADGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYAGTFYVSLRFLPKCRNCDYQQEA
DNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAM
RLYYVCTAPHCGHRWTE
NT seq 414 nt   +upstreamnt  +downstreamnt
atggaggcggacgggacgtacgagccgggcttcgtggggatccgcttctgccaggagtgc
aacaacatgctgtaccccaaggaagacaaggaaaacagaatcctgctctatgcgggtaca
ttttatgtctctctccgtttccttcccaagtgtcgaaactgcgattaccaacaggaagcc
gacaacagctgcatctatgtcaataagatcacccatgaagtggatgaattgacacaaatc
attgcggacgtttcccaggacccaactttgccccggacagaggatcacccatgtcagaag
tgcgggcacaaagaagcagtattcttccagtctcacagcgcaagggctgaggatgccatg
aggctgtattacgtgtgcaccgctccgcactgcggccaccgctggactgaataa

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