Caretta caretta (Loggerhead turtle): 125628103
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Entry
125628103 CDS
T09292
Symbol
DHX34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34 isoform X1
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125628103 (DHX34)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125628103 (DHX34)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125628103 (DHX34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_16
AAA_22
nSTAND3
CortBP2
Motif
Other DBs
NCBI-GeneID:
125628103
NCBI-ProteinID:
XP_048688828
LinkDB
All DBs
Position
27:11805664..11824910
Genome browser
AA seq
1335 aa
AA seq
DB search
MPSSEKERRAKRRSRDPSPSRGQQGGCWDWSCPEMRRRLEELYFREQDYIRAGSEDSRQF
WAFFGRLQRFQTLKAKGEPAVWAPPARADPSAAPGLAGLPREYDPCYRINLSVLSGDVEG
LARGRRGGPRQGPGVPAEQRSQFRAALLHYLDFAQKQSFAKLAKLQRERAALPIAQYRDR
LLRAVAQNQVVVVAGDTGCGKSTQVPQYLLAAGYSHVACTQPRRIACISLAKRVGFESLH
QYGAEVGYQIRFESTRSPATKIVFLTEGLLLRQVQREPALPGYQVLIADEVHERHLHSDF
LLGVLRRLLPARPDLKLVLMSATINIRLFAGYFGGAPVVQVPGRLFPITVVYQPIPQEEA
LAASGKPERLDPRPYLRVLQAIDHKYPPEERGDLLVFLSGVAEISAVLEVAQAYATHTQR
WVVLPLHSTLSIAEQDKVFDMPPPGVRKCIVSTNIAETSVTIDGVRFVLDSGKVKELSYD
PQAKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIQRVALDA
LVLQMKSMGLGDPRTFPFLEPPPQSSLETAVRYLREQGALDRAESLTPIGSLLAQLPVDV
VIGKMLVLGALFGLAEPVLTMAAALSVQSPFLRPTRTNPDCATARRPLESPHGDPLTLLN
TFNEWVQVKSERAGSSRKWCRLRGLEEHRLYEAANLRHQFQALLRDHGLLEPVQGPRDSY
ARQSRHRERRELHRLRQRHEETGGRTRKVLRLQEGEAGSSSDEGASGTGPSGVDIQDVKF
KLRHNVDELQAASGTALSSHQFALLKLVLCRGLYPQLAVPDQYNSCRKDSDQIFHTKNKQ
GIVLHPTCVFASSPELLQATEEKAEPGRSRGSQEGLSSRHQLLAFVSLLETNKPYLVNCL
RAPALQALLLFSRALDTSADCTRLVADSWLELCVPDSGAALRLLSTALQLRAAWEGLLNR
QLEGRRGEPGHRPDPREVATLRQGLLEFLQQKVQYSLRRLTALEKQNCYVGPQTVAAAPG
LPGLFQGAEMTPDEEKGGYRVAEFLTYNCLALPWKRPLRVQPKQLLCRDLITAMPASGTS
CSRPRRSCGTESNTSDGQGCVSGPSPDGGLVVRAGSWVSGLLGSLPSSGRAHGPAPTKRM
AAHPGRAGRTHGAGSGWELSPAAVAPSLTPRLVCYESGWRVRYGAGLFVTPCLWVCQGIA
PVPVGLGRSGGARGTAPPGGDTCRVFVHVNKCPLVEERSPRMGGPGCPGEALWYTVGWRG
WHNGSFWPSISGSDGPGWGNSTVLTAALPCAAGAGTLAWAMGQPIPEPWWLSAAQRPAAP
RDTPVLRLVSAAALE
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgtcggagaaggagcgcagggccaagaggcgaagcagagacccctccccgtcc
cgggggcagcagggcggctgctgggactggagctgccccgagatgcggcgccggctggag
gagctgtatttccgggagcaggattacatccgggcgggctctgaagacagccgccagttc
tgggccttcttcggccggctccagcgcttccagaccctgaaggcgaagggggagccggcg
gtgtgggctcccccggcccgggctgacccctctgccgcccctgggctggctggcctccca
cgggagtacgacccgtgctaccggatcaacctgtcggtgctgagcggggacgtggagggg
ctggcgcggggcaggagggggggtccgcggcagggcccaggggtgccggccgagcagcgc
tcccagttccgcgccgccctgctgcattacctggacttcgcccagaagcagagctttgcc
aagctggccaagctgcagcgggagcgggcggccctgcccattgctcagtaccgcgaccgg
ctgctgcgggctgtggcccagaaccaggtggtggtggtagccggcgacacgggctgtggc
aagtccacacaggtcccccagtacctgctagcggctgggtacagtcacgtggcctgcacc
cagccacgtcgcatcgcctgcatctcgctggccaagcgggtgggctttgagagcctgcac
cagtatggggctgaggtgggataccagatccgcttcgagagcacccgctccccggccacc
aagatcgtcttcctgacggaggggctgctgctgcggcaggtgcagcgcgagccggcgctg
cccgggtaccaggtgctgattgccgacgaggtgcacgagcggcatctgcatagcgacttc
cttctgggcgtgctgcgccgcctgctgcccgcccgccccgacctcaagctggtgctcatg
tcggccaccatcaacatccgcctctttgcggggtacttcgggggtgcccccgtggtgcag
gtgcccggccggctcttccccatcacggtcgtctaccagcccatcccccaggaggaggct
ctggcagcgagcgggaagccggagcggctggacccccggccctacctgcgggtgctgcag
gccatcgaccacaagtacccgcccgaggagcggggcgacctgctcgtcttcctgagcggg
gtggcggagatcagcgccgtgctggaggtggcccaggcctatgccacccacacccagcgc
tgggtggtgctgcccttgcacagcaccctctccattgccgagcaggacaaggtgtttgac
atgccccccccaggagtccggaaatgcatcgtctccaccaacatcgccgagacctcggtc
accatcgatggggtgcgctttgtgctggactctgggaaggtgaaggaactcagctacgac
ccccaggccaagctgcagcggctgcaggagttctggatcagccgggccagcgccgagcag
cggaaggggcgcgcgggccggacgggccccggggtctgctaccggctctacgctgaatct
gactacgacgccttcgctccctacccggtgccggagatccagcgcgtggcgctcgacgcc
ctggtgctgcagatgaagagcatggggctgggtgacccccggaccttccccttcctggag
ccgcccccccagtccagcctggagacagccgtgcgctacttgagggagcagggggcgctg
gacagggccgagagcttgacgcccatcgggagcctgctggcccagctgcccgtggacgtg
gtgatcgggaagatgctggttctgggtgcgctcttcgggctggctgagccggtgctcacc
atggcggcagcgctgagcgtgcagtccccattcctgcgccccacacgcaccaaccccgac
tgtgccacggcccgccggcccctcgagagcccccacggcgacccgctgacactgctcaat
accttcaacgagtgggtgcaggtgaagtcggagcgggctggcagctcccggaaatggtgc
cggctccgggggctggaggagcaccggctctacgaggcggccaacctgcggcaccagttc
caggcgctgctccgggaccacggtctgctggagcctgtgcaggggcccagggacagctac
gcccggcagagccgacaccgggagcgccgggagctgcaccggctgcggcagcggcatgag
gagacgggggggcggacgcgcaaggtgctgaggctgcaggaaggggaggccggctcctcc
agcgacgagggagccagcgggaccgggccgtcaggcgtcgatatccaggacgtcaagttc
aagctacggcacaacgtggacgagctccaggctgcgtccggcacggccctgtcctcccac
cagtttgccctgctcaagctggtgctgtgcaggggtctctacccccagctggccgtgccc
gatcagtacaacagctgccgcaaggactctgaccagatttttcacaccaagaacaagcag
gggattgtcctgcacccgacctgcgtctttgccagcagcccagagctgctgcaggccaca
gaggagaaggcagagcccgggaggagcagaggttcccaggaggggctgagcagccggcac
cagctcctggccttcgtctcgctgctggagaccaacaagccctacttggtgaactgcctg
cgggcgccggccctgcaggctctcctactgttctcccgtgccctggacaccagcgcggac
tgcacgcggctggtggcagactcctggctggagctgtgcgtgccggacagcggggcggcc
ctgcggctgctctccacagccctgcagctccgcgccgcctgggaggggctcctgaaccgg
cagctggaggggaggcgcggggagccagggcacaggccggaccctcgggaggtggcgacg
ctgaggcaggggctgctggagttcctgcagcagaaggtgcagtacagcctgcgccggctg
acggcgctggagaagcagaactgctacgtggggccccagacggtggcggctgcaccgggg
ctcccggggctcttccagggggcagagatgacgcccgacgaggagaagggcggctacagg
gtggctgagttcctgacctacaactgcctcgcgctcccctggaagaggccgctgagagtt
cagccaaagcaactgctctgcagagaccttatcactgcgatgcctgcgagcgggacttct
tgttcacgtccacggagatcctgcggcacagaaagcaacaccagtgacggccagggttgt
gtgtctgggcctagccctgacgggggcctagtggtcagagcagggagctgggtgtcagga
ctcctgggttctctccccagctctgggagggcacatggtcctgctcctacaaagcgcatg
gcagcgcatcctggccgcgctggccggactcacggtgcggggtcagggtgggagctgagt
cctgcagcggtcgctccctcgctgactcccaggttagtttgttacgagtcgggttggcgg
gttcgttacggggcaggcctgttcgttaccccctgcctgtgggtctgtcagggcattgct
ccggtgccggttggactgggccgctctggtggggccagaggcactgctccccctggcggg
gacacgtgtcgggtgtttgtacatgtgaataaatgtcccttggttgaggagcgcagcccg
cgaatggggggcccaggctgtccaggggaggctctctggtacacagtgggctggaggggg
tggcacaatggctccttctggcccagcatctctgggtctgatggccccggatggggaaac
tcaacagtgctaacagctgctttgccctgtgcggcgggggctggaaccctcgcgtgggcc
atggggcagcccatacctgagccctggtggctcagtgcagctcagcgccctgcagccccc
cgggacacccccgttctgcgcctggtctctgcagcagcattggaatag
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