Caretta caretta (Loggerhead turtle): 125628253
Help
Entry
125628253 CDS
T09292
Symbol
NPAS1
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccay03000
]
125628253 (NPAS1)
Transcription factors [BR:
ccay03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
125628253 (NPAS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_4
PAS_9
HLH
SIS_2
Motif
Other DBs
NCBI-GeneID:
125628253
NCBI-ProteinID:
XP_048689120
LinkDB
All DBs
Position
27:7886420..7983019
Genome browser
AA seq
878 aa
AA seq
DB search
MAAPFGNEVKCVSVEWDFLQGLLVKNQPVPCLQALRKEKSRNAARSRRGKENFEFYELAK
MLPLPGAITSQLDKASIVRLTISYLKMRDFASHGEPPWGLRAEGSPPPGPAGKGPGRRNM
AALLTKLFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYI
HPGDHPEVAEQLGLKLPFDAVGSPPESQKPPGLTGASSSSSCSSSLNEASEPDPASSHAP
PKHDALERSFFVRMKSTLTKRGLHVKTSGYKVIHVTGRLRPRLPSFSHAHSVLSRVLGLV
ALAHTLPPSTLSEVRIECHMFVFRVNMDLQIVYCESRISDYMDLCPSELVGKSCYQFIHG
EDVEGIRQSHLDLLKKGQVVTRYYRWLQKNGGFVWIQSCATISVNIKNPSERNMVWVNYI
LSKPECKNMALDIFQLPGIPARQTDASDVSDLEPDFKESDHGPEHKQGNQFLPKAAGALA
KGYSRSTPDDAARCSMAENDASSPEMSYKDEDVSEGAGASDAESRRRGPQSKRIKLEFQP
ESPPREASLVSTEESDSGSEEEPDLPPQPVALERRVNGYNMAAGRNAGPSQPCTSEFASV
IQTQRSYPPKTSAALSIKTEQSQAPKYDKAALWTYPSARDALHEGPPYTVSKALSLEKPI
LRQATSHLYVSIPDSVLTPPEMDSSGGLAKAPFSTSPRAMLPAPSAETLSPPLSGSPCEE
RATSTPFAPLVYPGEMEALQRFHAGNVVLPLVHQLGGHHGIASTTGSQSLYTTSTIRYAP
ADVTLAVPGNVLPASHAINLMDIGSVESKASMELMYHHIQRLNMVAPFGNSASATGLAQI
SGAAGGVFTAAESLFSTLPFSMASGGIHSLSATERKED
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggcagccccgttcggcaatgaggtgaagtgcgttagcgtagagtgggacttcttgcaa
ggactgttggttaagaatcagccagtgccctgtctgcaggccctgcggaaggagaagtcc
cgcaatgccgcccgctcccggcgcggcaaggagaacttcgagttctacgagctggccaag
atgctgcccctgcccggcgccatcaccagccagctggacaaagcctccatcgtccgcctc
accatcagttacctcaagatgcgcgacttcgccagccacggtgagcccccgtgggggctg
cgggccgaagggagccccccgcccggccctgccggcaaaggtcccggcaggaggaacatg
gcagctctgctgaccaagctctttgaacagcatctgggaggacacattttgcagtctctg
gacgggtttgtgtttgcactaaaccaagaggggaagtttctttacatctccgagacggtg
tctatttacctcgggctctcgcaggtggagctgacgggcagcagcgtctttgactacatc
catcctggagatcaccctgaggtcgccgagcaactggggctcaagctgcctttcgatgct
gtcggctccccgccggagagccagaaacctccaggcctcactggggccagctcttcctcc
tcctgctcctcctccctgaacgaggcctctgagccggatcctgccagctcccacgcgccc
cccaagcatgacgccctggaacgatccttcttcgtccgtatgaaatccaccttgaccaag
agagggctgcacgtgaagacttctggctacaaggtgattcatgtcactggccgtctccgc
ccccgcctgccgtccttctcccacgcccattcggtcctcagccgagtcctggggctggtg
gccctggcccacacgttgccgccttccacgctcagcgaggtgcgcatcgaatgccacatg
tttgtgttccgggtcaacatggacctgcagatcgtgtactgtgagagcaggatcagcgat
tatatggacctgtgcccctcggagctggtagggaaaagctgttaccagtttatccatggt
gaggatgtggaaggaatccggcagagccacctggacttgttgaaaaaaggccaggtcgtg
acccgatattaccgctggctgcagaagaatgggggctttgtgtggattcagtcgtgtgcc
accatctcggtcaatatcaagaaccccagcgagaggaatatggtctgggtcaattacatc
ctcagcaaacccgagtgtaagaacatggccctggacatcttccagctgcctgggattcca
gcccgacagaccgatgcctccgacgtgtccgacttggaacccgacttcaaagagagcgac
catgggccggaacacaagcaggggaaccagtttctgcccaaagcggctggggccttggcc
aaaggttactcccggagcaccccggacgatgcggcccgttgctccatggcggagaacgac
gccagcagcccggaaatgagctacaaggatgaggacgtgtcggaaggcgctggggcgagc
gacgccgagagcaggcgcagggggccccagagcaaacggatcaagctggagttccagccg
gagagccccccccgggaggcctcgctcgtcagcactgaggagtcggacagcggcagcgag
gaggaacctgatctcccgccccagccggtggcgctggagaggagggtgaacgggtacaat
atggcggcagggaggaacgcggggccgagccagccttgcacatcggagttcgcctccgtc
atccagacccagaggagctacccaccgaaaaccagcgcagcgcttagcattaagacagag
cagagccaggctcccaagtacgacaaggccgccctgtggacctacccctctgcccgggat
gccctccacgagggacccccctacactgtgagcaaagcacttagcctggagaagcccatt
ctgaggcaagccacttcccacttgtacgtctccatcccggactcagtcctcacccctccc
gagatggacagcagcggaggcctggccaaggcccccttcagcacatctccccgggctatg
ctgccggccccctcagctgaaacgctctcccccccgctctcgggctcaccgtgcgaggaa
agggccacgtcgacgcccttcgcccccctggtctatcctggcgagatggaggcgctccag
cggttccacgcggggaacgtggtcctcccgctggtgcaccagcttggcgggcaccacggc
atcgccagcaccaccggctcccagagcctctacaccaccagcactatccgatacgcccca
gctgacgtgaccctggctgtgccaggcaatgtgctgcctgcctcccatgcaatcaacctc
atggacattggcagcgtggagtccaaggcctccatggaactcatgtaccaccacatccag
cggctcaacatggtggcgccgttcgggaactcagccagtgccaccggtttggcgcagatt
tcgggcgccgcggggggcgttttcacagctgccgaatccttgttctctacgctgcccttc
tccatggccagcggcggcatccacagcctgtcagccacagagcgcaaagaggactaa
DBGET
integrated database retrieval system
