Caretta caretta (Loggerhead turtle): 125628269
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Entry
125628269 CDS
T09292
Symbol
HDAC6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccay01009
]
125628269 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125628269 (HDAC6)
04131 Membrane trafficking [BR:
ccay04131
]
125628269 (HDAC6)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125628269 (HDAC6)
Enzymes [BR:
ccay01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
125628269 (HDAC6)
Protein phosphatases and associated proteins [BR:
ccay01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125628269 (HDAC6)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125628269 (HDAC6)
Membrane trafficking [BR:
ccay04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125628269 (HDAC6)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
125628269 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
125628269
NCBI-ProteinID:
XP_048689149
LinkDB
All DBs
Position
27:999254..1012828
Genome browser
AA seq
1034 aa
AA seq
DB search
MPGSGQAKRGGRKGPPPRRSPGLPETKRRGRAQRMNKEAEELESGLRRLDLSVPAAVPVG
TGLAFDERLTGFHCLWDDSFPERPERLAAVQGKLLQCGLWERCVLVEARLATEEEILLAH
SQEYVELMKSTEQMSEQELRALSETYDSVFLHPDSFRCARLAGGCVLRLLEKMQSGELRN
GLALVRPPGHHAHRDKMDGYCMFNHLAIGARYARQKLGVERVLIVDWDVHHGQGTQFLFE
EDPSVLYFSVHRYEQGRFWPHLPASDSPAVGQGCGEGFNVNVPWNAVGMRDGDYLAAFLH
VLLPVAFEFQPQLVLVAAGFDSVLGDPKGEMAVSPACFAHLTHLLMALAGGKMLLSLEGG
YNLNSLAEGVCAALRTLLGDPCPRLEPPVAPCRSALSSVSGTLAIHKKYWRSLQRGETDT
PPEDVDEEPAPVEPPDPPEVPRPLPAARTGLVYDERMTEHYNMWDSQHPELPQRVSRIFQ
RHGELRLTERCRRIPARSAEEEELRMCHSPAYVQTVKATASMKPRDLHRQGDQYNSIYIC
TSSYECARLAAGSAFNAVQAVLEGEVQNAVAIVRPPGHHAESDTACGFCFFNSVALAARF
AQRLAGRPMRVMILDWDVHHGNGTQHMFEEDPSVLYVSLHRYDRGSFFPTSEDADADRVG
VGPGRGFTLNVPWNSPHMGDAEYLAAFHRLVLPVAYQFDPELVLVSAGFDAARGDPLGGC
LVSPECYAHMTHLLLGLAGGRVVLVLEGGYNLVSISESMTMCTRTLLGDPLPELGHLQAP
HPSALQSLARASAVHRKYWTCLRLDVPIQQDSRPQSEQPGPIHEDSPPEAPSGGSQSPPV
SEGSVDDILRLGALCLSGEVETDSGSPQLSPDSALVGGASPGEAEPPAAEESEDPPSLLD
EAAALLPTPSVSLGVEFADTGTLYAVTPLPWCPHLDSLQPLPPAGLDVLAPCEECGSRGE
NWVCLACYQVLCGRYINQHMLAHGSLSGHPLVLSYADLSVWCYACQSYVHHPTLLPAKAL
AHRMKFGADPAAGL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcagcggccaagcgaagcggggaggccggaagggccccccgccccgtcgcagc
cctgggctccccgaaaccaagcgccgcggccgagcccagaggatgaacaaagaggcggag
gagctggaatcggggctgcggcgcctggatctgagcgtgccggcggcggtgcccgtgggg
acgggtctggcctttgacgagcggctcactggcttccattgcctgtgggatgacagcttc
cccgagcgcccggagagactcgcggctgtccagggaaagttgctgcagtgcggcctgtgg
gagcgctgtgtcctggtggaggcccggctggctaccgaggaagagattctgctagcccac
agccaggagtacgtggaactgatgaagtcaaccgagcagatgagcgagcaggagctcagg
gccctgtcggagacctacgactccgtcttcctgcacccggattcgttccgttgcgcccgg
ctggctggtggctgcgttctgcgtctgctggagaagatgcagagcggagagctgcgcaac
gggctggcgctggtccggccgccaggacaccacgcccaccgagataagatggacggttac
tgcatgttcaaccacctggccatcggggctagatatgcccggcaaaaactgggagtggaa
cgagtcttgatcgtcgactgggacgttcaccacgggcagggcacccagttcctcttcgag
gaggatcccagcgttctctatttctccgtccatcgctatgagcaggggaggttctggccc
cacctgccagcgtccgacagccccgccgtggggcagggctgcggagaggggttcaacgtc
aacgtgccgtggaacgcggtgggaatgagggacggtgattatctcgctgcgtttttacat
gtcttactgcccgtggcctttgagttccaaccccagctggttctggtggccgccgggttc
gactctgtgctcggggaccccaagggcgagatggctgtgtcgcccgcgtgcttcgctcac
ctgactcatctgctcatggccctggcgggcggcaagatgctgctgtctttggagggtggc
tacaatctgaactccctggctgagggggtctgtgcggccctgaggaccctcttgggggac
ccctgtccccggctggagccgcccgttgccccctgtcgcagcgctctgagctccgtgtct
gggacgctcgcgatccacaagaaatactggcggagcctgcagagaggggagaccgacacc
ccccctgaggatgtggacgaggagccagcccccgtggaacccccagaccctcctgaggtg
ccgcgacccctcccggctgcccgcaccggcctggtgtatgacgaacgcatgacagagcat
tacaacatgtgggacagccagcacccagagctgccccagcgggtctcccgcatcttccag
cgccatggggagctccggctcacggaacgatgccgccggatcccggcccgcagcgctgag
gaagaggagctgagaatgtgccacagcccagcctacgtgcagacggtgaaggccacggcc
agcatgaagccacgggacctgcaccgccagggtgaccagtacaactccatctacatctgc
accagctcctacgagtgcgcccggctggctgccggctcggccttcaacgccgtgcaggcc
gtgctggagggcgaggtgcagaacgccgtggccattgtccggccccccgggcatcacgcc
gagtccgacacggcctgtggcttctgcttcttcaattcggtagccctggcagctcgtttc
gctcagcgcctggcgggacggcccatgagggtgatgatcctggactgggatgttcaccac
ggcaacggtacccagcacatgtttgaggaagatccgagcgtgctgtacgtctctctgcac
cgctacgaccgcggctccttcttccccacctcggaggacgccgacgccgaccgggtaggg
gtggggccgggccgcggcttcaccctcaacgtgccctggaacagcccccacatgggtgac
gccgagtacctggctgccttccaccgcctggtgctgcccgttgcctaccagttcgacccg
gagctggttctggtgtcggctgggttcgatgccgcccgcggcgacccactggggggctgc
ctggtgagccccgagtgttacgcccacatgacccacctcctgctggggctggcggggggc
cgggtcgtgctggtactggagggaggctacaacctggtgtctatctccgaatccatgacc
atgtgcacccggaccctgctgggggaccccctgcctgagctggggcacctgcaagctccc
caccccagtgccctgcagtcgctggcccgggcgagcgccgtgcaccgcaaatactggacc
tgcctgcggctggatgtgccgatccagcaggactcgaggccccaatccgagcagccgggc
cccatccatgaggactccccaccagaggccccctcggggggctcccagagcccccccgtc
tccgagggctccgtcgatgacatcctgaggctcggagccctctgcctcagcggtgaggtg
gagaccgactcgggctccccccagctgagccctgactccgccctggtgggcggggcttcc
cctggagaggcggaacctccagctgcagaggagtcagaggacccccccagcctcctggac
gaagcagccgccctgctccccaccccctctgtcagcctgggggtggagttcgcagacacg
gggacgctctacgccgtgacccccctgccctggtgcccccacctggactcgctccagccc
cttcccccggccgggctggacgtgctggcgccatgtgaggaatgcggcagccggggcgag
aactgggtctgcctggcctgttaccaggtgctctgcgggcgttacatcaatcagcacatg
ctggctcatggctccctttccggccaccccctggtgctgagttacgcggacctgtcggtc
tggtgctacgcctgtcaatcatacgtccatcacccaaccctgctgccagccaaggccctg
gctcaccgcatgaagttcggggcggatccggccgctgggctctga
DBGET
integrated database retrieval system
