Caretta caretta (Loggerhead turtle): 125628373
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Entry
125628373 CDS
T09292
Symbol
HCFC1
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1
KO
K14966
host cell factor 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03083
Polycomb repressive complex
ccay04980
Cobalamin transport and metabolism
ccay05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125628373 (HCFC1)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
125628373 (HCFC1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125628373 (HCFC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccay01009
]
125628373 (HCFC1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccay03036
]
125628373 (HCFC1)
03029 Mitochondrial biogenesis [BR:
ccay03029
]
125628373 (HCFC1)
Protein phosphatases and associated proteins [BR:
ccay01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125628373 (HCFC1)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
125628373 (HCFC1)
HMT complexes
COMPASS/SET1 complex
125628373 (HCFC1)
MLL-HCF complex
125628373 (HCFC1)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
125628373 (HCFC1)
Mitochondrial biogenesis [BR:
ccay03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
125628373 (HCFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_5
Kelch_3
Kelch_4
Kelch_1
Kelch_6
Kelch_2
fn3
Motif
Other DBs
NCBI-GeneID:
125628373
NCBI-ProteinID:
XP_048689318
EnsemblRapid:
ENSCECG00000005500
LinkDB
All DBs
Position
27:544110..562834
Genome browser
AA seq
2329 aa
AA seq
DB search
MAAPTAEGARRTAALVLGRASGAMAAAPGGPALLQPRWKRVVGWSGPVPRPRHGHRAVAI
KELIVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMV
EYGKYSSDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED
PKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTERDNKKSKLVIY
GGMSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDV
KVATHEKEWKCTNTLACLNLDSMAWEPILMDTLEDNIPRARAGHCAVSINTRLYIWSGRD
GYRKAWNNQVCCKDLWYLETEKPPAPSRVQLVRANTNSLEVSWGSVPTADTYLLQLQKYD
IPAAASPAPAPVPSVPANPPKSPAPAAAAPAPPASQPLAQMGITLLPQAAAPTPTTTIQL
LPSVPGTPLPVASPARTQGVPAVLKVTGPQAPPGPPLVTVRSASQAGKAPVTVTSLPAGV
RMVVPTQSAQGTVIGSSPQMSGMAALAAAAAATQKIPPSSAPTVLSVPAGATIVKTVAVS
PGTATLPSTVKVASSPVMVSNPATRMLKTAAAQVGTSVSSTTNAATRPIITVHKSGTVTV
AQQAQVMTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQASS
GPVTQIIQTKGPLPAGTILKLVTSADGKPTTIITTTQAGGAGPKPTILGISSVSPSTTKP
GTTTIIKTIPMSAIITQSGATGVTSSPGIKSPITIITTKVMTSGTGAPAKIITAVPKLGT
AHGQQGVTQVVLKGAPGQPGTILRTVPMGGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTL
GTVTGTVSTSLAGAGGHSTNASLATPITTLGTIATLSSQVINPAAITVSAAQTTMTAASG
LGTPTITMQPVSQPTQVTLITTPSGVDAQPVHDLPVSILASPTTEQPTATVTIADVGQGD
PQPGTVTLVCSNPPCETHETGTTNTATATVVANVGGLTQPMHFVCEGQEAGQPNGGLVRV
CSNPPCETHETGTTNTATTATSSLGAGRVCTNPPCEMHETGTTNTATTATSSLGAGRACT
NPPCETHETGTTNTATSSLGAGRACTNPPCETHETGTTNTAPTARSLMGREQPDGGLVAP
PNPPCQTQHTSATRTTMSAKAGVPTEQPCSTRMANPPPAVPGTNAQSPAPAGRPCEAHQT
HTTNTATTARSLMGRGQPDGGPGPAKSPPCQTQQTCATHTTMSAKADVPTEQPCGVRMVA
PDVEAGQRSHVNDPCETGTTSTATSSVGTRQVCTNPPCETHESSTTTTATASVRAGRACT
NPPCETHETGTTNTATCTMGVGRVCTNPPCETHETGTTNTATTATCTMGAGRVCTNPPCE
THETGTTNTATTATSSLGAGRACSNPPCETHESGTTNTATTATCTMGVGGVCTNPPCETH
ETGITNMAATATCTMGAGRVCTNPPCETHETGTTNTATTATCTMGAGRVCTHPPCETHET
GTTNTATTATSSLGAGRACSNPPCETHESGTTNTATTATCTMGVGRVCTNPPCETHETGT
TNTATTATSSLGAGRACSNPPCETHETGTTNTATTATCNVGTGQAGGAQHTPGSAPSEMQ
QTTATSTTMAASMGGAGTEPPSSAPQEPGGAGPSQPQLLPTNPVPRVCSNPPCETHETGT
THTATTVTSSMGANHDQPPGANGQGQPEGAQGEAPASPSSVSAAQTRAVTTVTQSTPAPG
PAVPSISSLAETPAEEPPAPPCPEPAQPQLPEPPQPEPPAEPPAPPQPPAQGPPEPPPAP
PAPPGRPPAPTPDGEPLALPQELLAEGQAGATLLVTGLTPEELAVTAAAEAAAQAAATEE
AQALAIQAVLQAAQQAVLGAGEPMETGEAGTGPAELGALGGEGPEGQPTAIPIVLTPQEL
AALVQQQQQLQEAQAVAAAQQPHGAPLPTEALAPADSLNDPAAESNGLSELASAVSSTVA
LLPAAPSEGLAPSNTFVAPQPVVGPSPAKLQAAATLAEVANGIEPAPMKPDPSVQPQKLL
VKKENQWFDVGVIKGTNMMVTHYFLPLNDAPPSDDDSGTVPDYTQLKKQELQPGTAYKFR
VAGLNACGRGPFSDISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIVEYSV
YLAIQSAQAGEPKGTAPAQLAFMRVYCGPSPSCLVQSGSLANAHIDYTTKPAIIFRIAAR
NEKGYGPATQVRWLQESSKDGSMAKPASKRPLSSPDMKSAPKKPKADGQ
NT seq
6990 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccacggctgagggagcccgccgtacagcggctctggttttggggagagcg
agcggggccatggcggcggcccccggcggccccgcgctgctgcagccgcgctggaagcgg
gtcgtgggctggtcgggccccgtgccccggccccgacacggccaccgcgccgtggccatc
aaggagctgatcgtcgtcttcgggggcggcaacgaggggatcgtcgacgagctgcacgtc
tacaacacagccaccaaccagtggttcatcccggccgtgcggggcgacattccccccggc
tgcgccgcctacggcttcgtgtgcgacggcacccggctgctggtcttcgggggcatggtg
gagtacggcaagtacagcagcgacctctacgagctgcaggccagccgctgggagtggaag
agactcaaggccaagacccccaagaatgggccgcccccctgcccccgcctgggccacagc
ttctcactcgtgggcaacaagtgctacctgtttggggggctggcaaacgacagcgaggac
cccaagaacaacattcccaggtacctgaatgacctgtacatcctggagctgcgccccggc
tccggcgtggtggcctgggacatccccatcacgtatggggttctgcccccgccccgcgag
tcccacaccgccgtggtgtacaccgagagggacaataagaaatccaagctcgtcatctac
gggggcatgagcggctgccgcctcggtgacctctggacgctggacatcgagacgctgacg
tggaacaagcccagtctgagcggcgtggcgcccctcccccgcagcctgcactccgccacc
accattggcaacaagatgtacgtcttcgggggctgggtgcccctcgtcatggacgacgtc
aaagtggccacgcacgagaaggagtggaagtgcaccaacacgctggcctgcctcaacctg
gactccatggcctgggagccgatcctcatggacacgctggaggacaacatcccgcgggcc
cgggcggggcactgcgccgtgtccatcaacacccgcctctacatctggagcggacgcgac
gggtaccgcaaggcctggaataaccaggtctgctgcaaggacctgtggtacctggagaca
gagaaacccccggcaccctcgcgggtgcagctggtgcgggccaacaccaactcgctggag
gtgagctggggctcggtgcccacagctgacacctacctgctgcagctgcagaagtacgac
atcccggcggccgcctcgcctgcccctgccccggtgccctccgtgcccgccaacccaccc
aagagccccgccccagccgctgccgcccccgcgccgcccgccagccagcccctggcccag
atgggcatcaccctgctgccccaggccgccgcccccacgcccaccaccaccatccagctg
ctgccctctgtgcctggcacgcccctgcccgtggccagccccgcacgcacacagggtgtc
ccggccgtgctgaaggtgacaggcccccaggcccccccggggccccccctggtgacggtg
cgctcggccagccaggcgggcaaggccccggtgacggtgacctcgctgccggctggcgtg
cgcatggtggtgcccacgcagagcgcccagggcacggtgatcggcagcagcccgcagatg
agcggaatggctgccctggcggccgccgcggccgccacacagaagatccctccctcctct
gcgcccacagtgctgagcgtgccagccggcgccaccatcgtcaagaccgtggctgtctcc
ccgggcaccgccacgctgcccagcactgtcaaggtggcctcctcccccgtcatggtgagt
aacccggccacccgaatgctgaagacagcagcagcccaggtgggcacctcggtatcgtcc
acgaccaacgcggccacgcggcccatcatcacagtgcacaagtcgggcacggtcaccgtg
gcacagcaggcccaggtcatgaccaccgtggtgggtggcgtcaccaagaccatcaccctg
gtgaagagccccatctccgtgccggggggcagcgcactgatctctaacctgggcaaagtg
atgtcggtcgtgcagaccaagccagtgcagacctcggccgtgaccggccaggcctccagc
ggccccgtcacccagatcatccagaccaagggccccctgccggcgggcaccatcctgaag
ctggtgacgtcagcggacgggaagcccaccaccatcatcaccaccacgcaggcgggcggc
gccggccccaagcccaccatcttgggcatcagcagcgtctcgcccagcacaaccaagccg
ggcaccaccaccatcatcaaaaccatccccatgtcggccatcatcacccagtctggggcc
acgggtgtgaccagcagccctgggatcaagtcccccatcaccatcatcaccaccaaggtc
atgacctcaggcacgggcgcccccgccaagatcatcacagcggtgcccaagctgggcacg
gcccacgggcagcagggcgtcacgcaggtggtcctgaagggtgctccaggccagcccggc
accatcctgcgcaccgtgcccatgggtggtgtgcggctggtcacgcccgtcaccgtctcc
gctgtcaagcccactgtcaccacgctggtggtgaaaggaacaacgggtgtcaccaccttg
ggcaccgtgacgggcaccgtctccaccagcctggctggcgcagggggccacagcaccaac
gcctcgctggccactcccatcaccacgctgggaaccatcgccaccctgtccagccaggtg
atcaacccagccgccatcaccgtctctgccgcgcagaccaccatgacggccgccagcggg
ctgggcacgcccaccatcaccatgcagcccgtctcgcagcccacgcaggtgacgctgatc
acgacgcccagcggggtggatgcccagccggtgcacgacctgccagtctccatcctggcc
tcgcccaccacggagcagcccacagccacggtgaccatcgccgatgtggggcagggcgac
ccgcagcctggcaccgtcaccctggtgtgctccaacccgccctgcgagacccacgagacc
ggcaccaccaacactgccacagccaccgtcgtggccaacgtgggcggcctaacccagccc
atgcacttcgtgtgcgagggccaggaggccgggcagcccaatggtgggttagtgcgcgtc
tgctccaaccccccgtgcgagacgcacgagacaggcaccaccaacacggccaccacggcc
acgtccagcctgggtgccgggcgagtgtgcaccaaccccccgtgcgagatgcacgagacg
ggcaccaccaacacggccaccacggccacgtccagcctgggcgccgggcgagcgtgcacc
aaccccccgtgcgagacgcatgagacgggcaccaccaacacggccacgtccagcctgggc
gccgggcgagcgtgcaccaaccccccgtgcgagacacacgagacgggcaccaccaacacg
gcccccacggcccggtcgctcatggggcgggagcagccggatggcggcctggtagcccca
cccaacccgccgtgccaaacgcagcacaccagtgccactcgcaccacaatgtcggccaaa
gctggcgtgcctacagagcagccgtgcagtaccagaatggcaaatccccccccggcggtg
cctggcaccaacgcacaatccccggcgccggctggccggccctgtgaggctcaccagacc
cacaccaccaacaccgccaccacagctcggtcgctcatgggccggggccagccagacggt
gggccggggccagccaagagccccccgtgccaaacccaacagacttgtgccactcacaca
acaatgtcagccaaagcagacgtgcccacggaacagccgtgcggcgtgaggatggttgcg
ccggacgtggaggctgggcagcgatcacacgtcaatgacccttgtgagacgggcaccacc
tccacggccacgtcaagcgtgggcacccggcaagtgtgcaccaaccccccgtgcgagacg
cacgagagcagcaccaccaccacggccacagccagcgtgcgcgctgggcgagcgtgcacc
aaccccccgtgcgagacgcacgagaccggcaccacaaacacggccacatgtaccatgggc
gttggacgagtgtgcaccaaccccccgtgcgagacgcacgagacgggcaccaccaacaca
gccaccacggccacatgcaccatgggcgccgggcgagtgtgcaccaaccccccgtgcgag
acgcacgagacgggcaccaccaacacggccaccacggccacgtccagcctgggcgccggg
cgagcgtgcagcaaccccccgtgcgagacgcacgagtcgggcaccaccaacacggccacc
acggccacatgcaccatgggcgttggaggagtgtgcaccaaccccccgtgcgagacgcat
gagacgggcatcaccaacatggccgccacggccacatgcaccatgggcgccgggcgagtg
tgcaccaaccccccgtgcgagacgcacgagacgggtaccaccaacacagccaccacggcc
acatgcaccatgggcgccgggcgagtgtgcacccaccccccgtgcgagacgcacgagacg
ggcaccaccaacacggccaccacggccacgtccagcctgggcgccgggcgagcgtgcagc
aaccccccgtgcgagacgcacgagtcgggcaccaccaacacggccaccacggccacatgc
accatgggcgttggacgagtgtgcaccaaccccccgtgcgagacgcacgagacgggcacc
accaacacggccaccacggccacgtccagcctgggcgccgggcgagcgtgcagcaacccc
ccgtgcgagacgcacgagacgggcaccaccaacacggccaccacggccacatgtaacgtg
gggacgggccaggctgggggggcccagcacacccctggcagcgcgccctccgagatgcag
cagaccacagccaccagcaccaccatggcagccagcatggggggagctggcaccgagccc
ccctcctctgccccccaggagccggggggagcagggcccagccagccccagttgcttccc
acaaacccggtcccacgcgtctgctccaaccccccctgcgagacacacgagacgggcaca
acccacacggccaccactgtgacctccagcatgggcgccaaccacgaccagccgccgggc
gccaacgggcaggggcagcccgagggggcgcaaggcgaggcccccgccagccccagcagc
gtctccgccgcgcagacccgcgccgtgaccaccgtgacgcagtccacgcccgcgccgggc
cccgccgtgccgagcatctcgtcactggcagagacccccgcggaggagccgccggcgccc
ccctgtccggagccagcgcagccccagctccccgagccgccacagccagagccgccggcc
gagcccccggccccgccgcagccccccgctcagggccccccggagcctcccccggccccg
ccggcgccccccggccggcccccggcgcccaccccggacggggagccactggccctgccc
caggagctgctggccgagggtcaggcgggcgccaccctgctggtgacagggctgacgccc
gaggagctggcggtgacggctgctgccgaggccgcggctcaggccgcagccaccgaggag
gcccaggccctggccatccaggccgtgctgcaggcggcccaacaagccgtgctgggtgcg
ggggagcccatggagacgggcgaggcgggcacggggccagcggagctgggggcgctgggg
ggcgagggccccgaggggcagcccacggccatccccatcgtgctgacgccgcaggagctg
gccgccctggtgcagcagcagcagcagctgcaggaggcccaggcggtggctgcggctcag
cagccccacggcgcccccctgcccaccgaggccctggcgcccgccgacagcctcaacgac
ccggccgccgagagcaacgggctgagcgagctggccagcgctgtcagcagcaccgttgcc
ctcctgcccgccgcgcccagcgagggcctggctccgtccaacacattcgtggccccacag
cccgtggtggggcccagcccagccaagctgcaggcggctgccaccctggccgaggtggcc
aatggcattgagcctgcccccatgaagccggatccctcggtgcagccccagaagctgttg
gtgaagaaggaaaaccagtggttcgacgtgggtgtcatcaagggcaccaacatgatggtg
acccattacttcctgcccctcaacgacgcgccccctagcgacgacgactcgggcactgtc
cccgactacacgcagctgaagaagcaggagctgcagccgggcacggcctacaagttccgg
gtggccgggctgaatgcctgtgggcgcggccccttctccgacatctccgccttcaagacc
tgcctgcccggcttcccgggtgcgccctgcgccatcaagatcagcaagagccctgatggg
gcccacctgacgtgggagccaccctcggtgacctcggggaagatcgtggagtactcggtg
tacctggccatccagagcgcccaggcgggcgagcccaagggcacggcaccggcccaactg
gctttcatgcgggtctactgcgggcccagtccatcgtgcctcgtgcagtcgggcagcctg
gccaacgcccacatcgactacaccaccaagccggccatcatcttccgtatcgccgcccgt
aacgagaagggctacgggcccgccacccaggtccggtggctgcaagagtccagtaaggac
ggctccatggccaaaccggccagcaagcggccgctctcctctcccgacatgaaatctgct
ccaaagaagccgaaggccgacgggcagtga
DBGET
integrated database retrieval system
