Caretta caretta (Loggerhead turtle): 125628383
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Entry
125628383 CDS
T09292
Symbol
L1CAM
Name
(RefSeq) neural cell adhesion molecule L1 isoform X1
KO
K06550
L1 cell adhesion molecule
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125628383 (L1CAM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccay04515
]
125628383 (L1CAM)
04090 CD molecules [BR:
ccay04090
]
125628383 (L1CAM)
04091 Lectins [BR:
ccay04091
]
125628383 (L1CAM)
Cell adhesion molecules [BR:
ccay04515
]
Immunoglobulin superfamily
L1 family
125628383 (L1CAM)
CD molecules [BR:
ccay04090
]
Proteins
125628383 (L1CAM)
Lectins [BR:
ccay04091
]
I-type lectins (Siglecs)
125628383 (L1CAM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
Ig_2
ig
Bravo_FIGEY
V-set
Ig_DSCAM-DSCAML_C
C2-set_2
Ig_6
C2-set_3
V-set_CD47
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
125628383
NCBI-ProteinID:
XP_048689340
LinkDB
All DBs
Position
27:complement(609150..635784)
Genome browser
AA seq
1259 aa
AA seq
DB search
MAPTWGRLLRLWPLLLGLAKALTIPKEYEMHNLRQPPEMTEQLVEKLVVFPSDDIVLRCE
ATGNPPVTFRWTKDGHLFDPRREAGVTVVEGSGTLNIVNSNAGRYQGVYQCYASNELGTA
MGPEIHVINDSTPQWPKEKVLPVEVEEGESVVLPCNPPASAMPPRIYWLNSRIVHIAQDE
RVTVGQDGYLYFANVRGSDSHPDYICHAHYLGPRTIIQKEPLELRVRPTNSVKFRQPRLM
MPPGETSSHVALRGSSLALECIAEGFPTPTVEWVRLNGRLPAERMALENSRKTLRIRDVV
EEDDGEYQCIARNTQGTARHSYTVTVEAAPYWAQQPHSRVYGPGENVRLDCSVYGKPKPL
VSWRINGVPWAELQPDPGRTLRSGALILSQVTPNDSLVTQCEAVNRHGRLLANAYVYVIQ
LPAKILTPDEQRYAVVENQTASLHCQTFGAPVPSVDWFTERLEPALQDERAFVHTNGTLR
LSRTQRQDTGAYVCLAQNDQNNVTLRAWLEVKAATRIELGPQSAVVKKSSNVTFRCLVRF
DETLQEHGVEWRRDGRPIQESDDSDKYSIEPGWLRISSVDYPDQGVYSCRAHTELDAVEE
SAELRVVGRPGPVSELQVSEQQERRVKLSWTPGDDHNSPVEKFVVEAEDGLRDPGTWRDV
STVPGHQPWARLHLAPYGEFRFRVRAANRYGRGEPSAASTPVHTSQAAPERYPEGVAGEG
NETSNMLITWKPLNKSDWNAPELSYRVQWRRLGLGEHWSEETVSAPPLLVTETPTFVPYE
IKVQAVNPVGKGPEPPIVVGYSGEDVPLVNPENVGVELFNSTSVLVSWSLPHRDKLRGHL
RGFRVFYWRLGSVGERNRRQARAQPPPLVLTLEGEVSQARLGGLRPWSLYRLYVVVFNGR
SDGPHSEDVDFSTPEGVPSPPHSLLLERVSDTALALEWTPPRFPNGALTQYLLQYRQVNG
SELGPLHEMSVPVSQRNVTLARLDPRARYRFHLRALTRAGQGEPLVQEGGTVPEPVLPTL
DNISISRVGPDFTVITWVPSRHQANVEFEIQFMSKTTAEPWRTSGQANSTHGSYRLLNLR
PGTSYRVQFVGRDPSGGNVSFWESEVETDGKLLTTNPRSFATEGWFIGFICALILLLLVG
LTLCFLKHSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESEKEEKPFGGSQPSLDG
AVPALGSDDSLADYGGSDDVQFNEDGSFIGQYIGHTGKEAASNASSGATSPTNAPAALE
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggctcccacgtggggccggctgctccggctctggcctctgctgctgggcctggccaag
gccctcaccatccccaaggagtacgagatgcacaacctgaggcagcccccagagatgact
gagcagctggtggagaagctggtcgtgttccccagcgacgacattgtgctgcgctgcgag
gccaccgggaacccccccgtcacgttccgctggacaaaggatgggcacttgttcgacccg
cgtcgggaggccggggtgacggtcgtcgagggctcagggacgctgaacatcgtcaacagc
aacgcggggcggtaccagggcgtgtatcagtgttacgccagcaacgagctgggcacggcc
atgggccccgagatccacgtcatcaatgacagcaccccccagtggcccaaggagaaggtg
ttgccggtagaggtggaggagggggagtccgtggtcctgccctgcaacccccctgccagc
gccatgccccccagaatctactggctaaacagccggatcgtgcacatcgcgcaggacgag
cgggtcaccgtggggcaggacgggtacttgtacttcgccaacgtccggggctcggacagt
caccccgactacatctgccacgcgcactacctggggccccgcaccatcatccagaaggag
ccgctcgagctgcgggtccggcccaccaactcggtgaagtttcgccagccccggctcatg
atgccgccgggggagaccagctcccacgtcgccctgcgggggtccagcctggccctggag
tgcatcgcggagggcttccccacgcccaccgtggagtgggtccgtctgaacggccgcctg
cccgcggagcgcatggccctggagaactcccggaaaaccctgcggatccgggacgtggtg
gaggaggatgacggggagtatcagtgtatcgcccgcaacacccagggcaccgcccggcac
agctacaccgtcaccgtggaagctgccccctactgggctcagcagccccacagccgggtg
tatggccccggggagaacgttcggctcgactgctctgtctacgggaaacccaaacccctg
gtgtcctggaggatcaacggcgtcccctgggcagagctgcagccggacccggggcggacg
ctgcgctcgggggccctgatcctgagccaggtgacgcccaacgactcgctggtgacgcag
tgtgaggccgtgaaccgccatggccgcctgctggccaacgcctacgtctacgtcatccag
ctcccagcgaagatcctgaccccggacgaacagcgctacgccgtggtggagaaccagacg
gcgtctctgcactgccagaccttcggggcgcccgtgcccagcgtggactggttcaccgag
cggctggagccggcgctgcaggacgaacgcgccttcgtccacaccaatggcaccttgcgg
ctgagccggacccagcgccaggacaccggcgcctacgtgtgcctggcccagaacgaccag
aacaacgtcaccctccgcgcctggctcgaggtcaaagctgccacgcggatcgagctgggc
ccccaaagcgccgtggtgaagaaatccagcaacgtgaccttccggtgcctggtgcggttc
gacgagacgctgcaggaacacggggtcgagtggcggcgggacgggcgccccatccaggag
tcggacgacagcgacaagtacagcatcgagcccggctggctgcggatttccagcgtggac
tacccggaccagggcgtgtacagctgtcgggcccacacggagctggacgcggtggaggaa
agcgccgagctgcgggtggtgggccgccccgggccggtgtcggagctgcaggtgtcggag
cagcaggagcgccgggtgaagctgagctggaccccaggggatgatcacaacagccccgtt
gagaagttcgtggtggaggcggaggacgggctccgggaccccggcacctggcgggacgtc
agcaccgtccccggccaccagccctgggcccggctgcacctggccccctacggcgagttc
cggttccgggtccgcgcggccaatcggtacggacggggcgagcccagcgccgcctccacc
cccgtccacaccagccaggcggccccggagcgctaccccgagggggtggccggcgaaggg
aacgagaccagcaacatgctcatcacctggaagcccctgaacaagtcggactggaacgcc
cccgagctcagctaccgggtgcagtggaggcggctgggcctgggggagcactggagcgag
gagaccgtcagcgcccccccgttgctggtcacggagacccccacctttgtgccctacgag
atcaaggtgcaggccgtgaaccccgtcggcaaggggcccgagccccccatcgtggtgggg
tactctggagaggacgtgcccctggtgaaccctgagaacgtgggcgtggaactgttcaac
agcaccagcgtcctcgtcagctggagcctgccccacagagacaagctgcggggtcacctc
cgggggttcagggtgttttactggcggctgggcagcgtgggggagcggaaccggcgccag
gcccgggcccagccgccccccctggtgctgacgctggagggggaggtgtcgcaggccagg
ctgggggggctgcgcccctggagcttgtaccgcctctacgttgtcgtgtttaacgggcgc
agcgatgggccccacagcgaggacgttgacttcagcacccccgagggagtgcccagcccc
ccccactcgctgctcctggagcgggtctcggacacggcgctggctctggagtggacgccc
ccccggttccccaacggggccctgacccaatacctgctgcagtaccggcaggtgaacggg
tcggagctgggccccctgcacgaaatgtcggtccccgtctcccagcgcaacgtgacgctg
gcccggctggacccgcgggcccggtaccgcttccacctgcgggcgctgacccgggccggc
cagggcgagccgctggtgcaggagggcggcaccgtcccagagccagtgctccccactttg
gacaacatcagcatctcgcgggtggggcccgatttcaccgtcatcacctgggtcccgagc
cggcaccaggccaacgtggagttcgagatccagttcatgagcaagaccacggccgagccc
tggcgaacgtccggccaggcgaactccacccatggctcctaccggctcctcaacctgcgg
cccggcacctcctaccgcgtccagttcgtggggcgcgacccctcggggggcaacgtctcc
ttctgggagagcgaggtggagaccgacggcaagctgctgacgaccaacccgcgcagcttc
gccaccgagggctggttcatcggcttcatctgcgctctgatcctgctgctgctggtgggc
ctgaccctctgcttcctcaagcacagcaagggagggaagtactcggtgaaggacaaggag
gacacgcaggtcgactctgaagcccgacccatgaaggacgagacgttcggggagtacaga
tccctggagagcgagaaggaggagaagccgttcggcggcagccagccctccctcgacggg
gccgtcccggcgctgggcagcgacgacagcctggccgactacgggggcagcgacgacgtg
cagttcaacgaggatggatccttcatcggccagtacatcggccacacgggcaaggaggcg
gccagcaatgccagctcgggggctaccagccccaccaacgccccggctgccctggagtag
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