Caretta caretta (Loggerhead turtle): 125628389
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Entry
125628389 CDS
T09292
Symbol
POLD1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03030
DNA replication
ccay03410
Base excision repair
ccay03420
Nucleotide excision repair
ccay03430
Mismatch repair
ccay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125628389 (POLD1)
03410 Base excision repair
125628389 (POLD1)
03420 Nucleotide excision repair
125628389 (POLD1)
03430 Mismatch repair
125628389 (POLD1)
03440 Homologous recombination
125628389 (POLD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccay03032
]
125628389 (POLD1)
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125628389 (POLD1)
Enzymes [BR:
ccay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
125628389 (POLD1)
DNA replication proteins [BR:
ccay03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
125628389 (POLD1)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
125628389 (POLD1)
MMR (mismatch excision repair)
DNA polymerase delta complex
125628389 (POLD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_exo2
DNA_pol_B_2
Mim2
Motif
Other DBs
NCBI-GeneID:
125628389
NCBI-ProteinID:
XP_048689349
LinkDB
All DBs
Position
27:complement(2651873..2668058)
Genome browser
AA seq
1113 aa
AA seq
DB search
MEFKRKAPGVGAGGGDPAPAPRKRPKGGDWEDDGPSHFEEELALLDEVEAEIALEMKESQ
PAPDTVPLGSLISSVGNPKWQRPPPPRINPTQDVLCFQQVELDYYVGVPVPGMPGATQGP
VPVLRMFGVTAAGNSVCCHIHGFAPYFYVPAPAGFQPQHLSDFQRELNGAVLRDLRSNRE
GLSRAVLAVEMCNKESMYGYHGQRRLPFLKVTLALPRLVAPAKRLLEQGLRCEGLGVLGY
PAYEANIDFEIRFMVDRDVVGCNWIELPPGKYRLRPEQLMGEPPKELAKASLCQLEADVG
WADFISHPPEGDWQGIAPLRVLSFDIECAGRKGIFPEPDKDPVIQVANMVLRQGERDPFI
RNVFTLQSCAPIVGSQVLCYSQEAELLKAWAEFVRIVDPDIVTGYNIQNFDLPYLLQRSQ
ALKVATFPFLGRILGRKSVIRDSSFQSKQMGRRENKVINIEGRIQFDLLQVLLREFKLRS
YTLNAVSFHFLQEQKEDVQHSIITDLQNGSEQTRRRLAVYCLKDAYLPLRLLEKLMCVIN
YMEMARVTGVPLGYLLSRGQQVKVVSQLLRQAMKQDLVMPVVKSEGGEDYAGATVIEPQK
GYYDVPIATLDFSSLYPSIMMAHNLCYTTLLQQGAPERYGLSPEEFIRTPTGDLFVKASV
RKGLLPEILENLLAARKRAKVELQQETDPFKRQVLDGRQLALKVSANSVYGFTGAQVGKL
PCLEISQSVTGFGRQMIEKTKQLVESKYTMANGYSADAKVVYGDTDSVMCRLGVPSVAEA
MRIGREAATWVSSHFPPPIKLEFEKVYFPYLLINKKRYAGLYFSSSARTHDKMDCKGIET
VRRDNCPLVANLINTCLQKLLIDRDPTGAVAHAKEVISDLLCNRVDISQLVITKELTRTA
HEYAGHQAHVELAERMRRRDPGSAPSLGDRVPYVIVSAAKGVAAYMKSEDPIYVLENNMP
IDTQYYLEQQLAKPLLRVFEPILGEGRAESVLLRGEHTRCKTVLTSRVGGLMAFATKRST
CLGCRASLPHHGAVCEFCVGHQSELYQKEISHLAGLEEKFSRLWTQCQRCQGSLHEDVLC
TSRDCPIFYMRKKVQKDLDDQERLVARFGPPTW
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaagcggaaggctcctggggtgggggctggcgggggggaccccgccccagcg
ccgcggaagcggcccaaggggggtgactgggaggacgatggcccctcgcacttcgaggag
gagctggccctgctggacgaggtggaggccgagatcgcgctggagatgaaggagtctcag
ccggcccccgacacggtgcccctggggagcctgatctcttccgtggggaaccccaagtgg
cagaggccgccgccccccaggataaaccccacccaagatgtgctctgcttccagcaggtg
gagttggactattatgtgggtgtccccgtgccaggcatgcccggcgccacccagggccca
gtgcctgttctccggatgtttggcgtcacggcggccgggaacagcgtctgttgccacatc
cacggcttcgccccctacttctacgtgcccgccccggctggcttccagccccagcacctg
agcgacttccagcgggagctgaacggggccgtgctgcgggacctgcgctccaaccgggag
ggactgagccgggccgtgctggccgtggagatgtgcaacaaggagagcatgtacgggtac
cacgggcagcgccgcctgcccttcctgaaggtgaccctggctctgccgcggctggtggca
cctgccaagcggctgctggagcaggggctgcgttgcgaggggctgggtgtgctgggctac
ccggcctatgaggccaacattgacttcgagatccggttcatggtggaccgagacgttgtg
ggctgtaactggatcgagctgccccccggcaaataccggctgcgccccgagcagctcatg
ggggagccccccaaggagctggccaaggcctcgctgtgccaactggaggctgatgtgggc
tgggcagatttcatcagccacccccctgagggcgactggcagggcatcgccccactgcgg
gtgctgagcttcgacatcgagtgcgccggccgcaaagggatcttcccggagccggacaag
gacccggtgatccaggtggccaacatggtgctgcggcagggcgagcgcgaccccttcatc
cgcaacgtcttcaccctgcagagctgcgcccccattgtgggctcccaggtgctgtgctac
tcccaggaggccgagctgctcaaggcctgggcggagtttgtgcggatcgtggaccccgat
atcgtcacaggctacaacatccagaactttgacctgccctacctgctgcagcgttcccag
gccctcaaggttgccaccttccccttcctaggccgcatcctcgggcgcaaatccgtcatc
cgggactcgtccttccagtccaagcagatggggcggcgggagaacaaggtcatcaacatc
gaggggcgcatccagttcgacctgctgcaggtgctgttgcgtgagttcaagctgcgctcc
tacaccttgaacgccgtcagcttccacttcctgcaggagcagaaggaggatgtgcagcac
tccatcatcaccgacctgcagaacgggtcggagcagacacgccggcgcctggccgtgtac
tgcctgaaggacgcctacctgccgctgcgcctgctggagaagctgatgtgtgtcatcaac
tacatggagatggcgcgggtcaccggggtgccgctgggctacctgctctcccggggccag
caggtcaaggtggtgtcgcagctgcttcgccaggccatgaagcaggacctggtgatgccc
gtggtgaagtcagaggggggcgaggactacgctggtgccacggtcattgagcctcagaag
gggtactacgatgtgcccatcgccaccctggatttctcctccctgtacccctccatcatg
atggctcacaacctgtgctacaccacgctgctgcagcaaggggcgccggagcgctatggg
ctgtcccccgaggagttcatccgcacccccacgggcgacctctttgtcaaggcctctgtg
cgcaaggggctgctccctgagatcctggagaacctgctggctgcccgcaagagggccaag
gtggagctgcagcaggagaccgaccccttcaagcggcaggtgctggacggccggcagctg
gcgctcaaggtcagcgccaactctgtgtacggcttcaccggcgcccaggtgggcaagctg
ccctgcctggagatctcccagagcgtgacgggttttgggcgccagatgattgagaaaaca
aagcaactggtagagtcgaaatacaccatggccaacgggtacagcgccgatgccaaggtg
gtctatggggacacggactcggtgatgtgccgtctgggggtgccctcggtggccgaggcc
atgcggatcgggcgggaagcggccacctgggtctccagccacttcccgcctcccatcaag
ctggagtttgagaaggtgtatttcccctacctgctgatcaacaagaagcgctatgccggg
ctgtacttctcctccagcgcccgcacccacgacaagatggactgcaagggcatcgagacc
gtgcggcgtgacaactgccccctggtggccaacctcatcaacacctgcctgcagaaactg
ctcatcgacagggacccgacgggcgccgtggcccatgccaaggaggtgatctcggacctg
ctgtgtaaccgggtggacatctcccagctggtcatcaccaaggagctgacccgcacggcc
cacgagtacgccggccaccaggcccacgtggagctggccgagaggatgcggcggcgagat
ccgggcagtgcccccagcctgggcgaccgcgtcccctacgtcatcgtgagcgcggccaag
ggggtggcggcctacatgaaatcggaggaccccatctacgtgctggagaacaacatgccg
atcgacacccagtactacctggagcagcagctggccaagcccctgctgcgcgtcttcgag
cccatcctgggcgagggccgggccgagagcgtcctgctgagaggggagcacacgcgctgc
aaaaccgtcctgacctcccgggtcggggggctcatggccttcgccaccaaacgcagcacg
tgccttggctgccgcgccagcctgccccaccacggtgcagtgtgtgagttctgcgtgggg
caccagtcggagctgtaccagaaggagatctctcatctcgcggggctggaggagaagttc
tcccgtctctggacccagtgtcagcgctgtcagggcagcctccacgaagacgtcctgtgc
accagccgggactgccccatcttctacatgcgcaagaaggtgcagaaagacctggatgac
caggagcggctggtggcgcgattcggcccccccacgtggtga
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