Caretta caretta (Loggerhead turtle): 125628953
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Entry
125628953 CDS
T09292
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125628953 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125628953 (XAB2)
03041 Spliceosome [BR:
ccay03041
]
125628953 (XAB2)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125628953 (XAB2)
Spliceosome [BR:
ccay03041
]
Complex B
Other components
Prp19-related factors
125628953 (XAB2)
Complex C
125628953 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
RPN7
TPR_1
LTN1_E3_ligase_6th
NRDE-2
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
125628953
NCBI-ProteinID:
XP_048690132
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MPELEETPVAAGGGKPDLFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIY
ERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDYC
QFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSP
ENAEEYIEYLRSIDRLDEAALRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKS
LNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFD
SYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNV
HEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDARTI
FEKATKVNFKQVDDLACIWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDASEPVQ
NRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYFEES
FKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYL
LYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEKAIE
VLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIRHGNE
DTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLEQRAE
QLAAEAERDKPRSKEKILFVRSDASRSELAALSRQVNPDEIDIDEDEEEGDESEENEPDE
VQLEQQSVPSAVFGGLKAD
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaggagacgccggtggccgctggcggggggaagccggacctcttcttc
gaggaggaggatctgcagtacgaggaagaaatcctgcgcaaccccttctctgtcaagtgc
tggatccgctacattgagttcaagcagaacgcccctcggcatgtgctgaacctgatctac
gagagagccctcaaggagctgccaggcagttacaagctgtggtacaactaccttaagcag
cgccggaagcaggtgaagaacaggtgtgtgactgaccctggctatgaggaggtgaacaac
tgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagattactgc
cagttcctcatggaccagtgccggatcacccgcacacgcaggacctttgaccgggcactc
cgggcactgcccatcacgcagcaccatcgaatctggcccctctacctgaagtttgtgcgc
ttgtaccccctgcccgagacggctgtgcgagtctaccgcaggtacctgaagctgagccct
gagaacgctgaggagtacatcgaatatctgcgctccattgaccggctggatgaggctgcc
ctccgccttgccactgtggtcaatgacgagaggttcgtctccaaggaggggaaatccaac
taccagctgtggcacgagctttgtgacctcatctcccagaatcctgacaaggtgaagtcc
ctcaatgttggggccatcattcgcggaggcctcacccgcttcactgaccagctgggcaag
ctctggtgctccctggccgactactacatccgcagcgggcactttgagaaggcccgggac
gtgtacgaggaggccatccagacggtgatgacagtgcgggatttcacccaggtgtttgac
agctacgcccagttcgaggagagcatgatcgcagccaagatggagaccacctctgagctg
gggcaggaggaggaggatgatgtggacctggagctgcgcctggctcgctttgagcagctg
atcacacggcgccccctgctgctcaacagtgtgttgctgcgccagaacccccataatgtc
cacgagtggcacaagcgtgtgaagctctatgaggggaagccccgagagatcatcaacacc
tacacggaggccgtgcagaccgtggaccccttcaaggccaccggcaagacacacacactc
tgggtctcctttgccaagttctatgaagacaatgggcagattgaggatgccaggaccatc
tttgagaaagccaccaaggtgaacttcaagcaggtggacgacctagcctgcatttggtgc
gagtatggggagatggagctgcgccatgagaattatgaccaagccctgcgcatcctccgg
aaagccacggccatcccagccaggaaagcagaatactttgacgcctcagagcccgtccag
aaccgcgtgtacaagtccctcaaggtctggtccatgctggccgatctggaagagagcctg
ggcaccttcaagtccaccaaggcggtgtatgaccgcatcctggacctgcgcatcgccaca
ccccagatcatcatcaactacgccctcttcctggaggagcacacctacttcgaggagagc
ttcaaggcctacgagaggggcatctccctgttccgctggcccaacgtgtacgacatttgg
aacacctacctgaccaagttcattgaccgctatggtggcaagaagctggagcgtgcccgc
gacctcttcgagcaggcactggatggctgcccccagaaatacgccaagaccatctacctg
ttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggcggtgtacgag
cgggccacgcgggccgtgcagccctcagagcagtatgagatgtacaacatctacatcaag
cgggcagccgagatctatggggtcacgcacacccgcagcatctatgagaaggccattgag
gtgctgtcagacgagcacgcccgcgagatgtgccagcgctttgccgacatggagtgcaag
ctgggtgagatcgaccgggcccgggccatctactcctactgctcacaaatctgtgacccc
cggaccacaggctccttctggcagacatggaaggactttgagatccggcacgggaacgaa
gacacgatccgggagatgctgcgcatcaaacgcagcgtccaagccacctacaacacccag
gtcaacttcatggcctcgcagatgctcaaagtctccagcaatgccacaggcaccgtgtca
gacctggcgccggggcagagtggcatggacgacatgaagctgctggagcagcgggcagag
cagctggcggctgaggcagagcgggacaagccccggtccaaggagaagatcctctttgtc
aggagcgatgcgtcacgcagtgagctggccgcactctccaggcaggtgaaccctgacgag
attgacattgatgaggacgaggaggagggggatgagagcgaggagaatgagcctgatgag
gtgcagctggagcagcagagcgtcccctcagctgtgttcggggggctgaaggccgactga
DBGET
integrated database retrieval system
