Caretta caretta (Loggerhead turtle): 125629333 Help Entry 125629333         CDS       T09292                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism ccay  Caretta caretta (Loggerhead turtle) Pathway ccay04510   Focal adhesion ccay04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:ccay00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125629333 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     125629333 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ccay00536]     125629333 (COL2A1) Glycosaminoglycan binding proteins [BR:ccay00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125629333 (COL2A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  125629333 NCBI-ProteinID:  XP_048690694 LinkDB All DBs Position Unknown AA seq 1490 aa AA seqDB search MFNFVDSRTLVLLAAAQVILLAVVRCQEEDIQEAGSCVQDGQRYSDKDVWKPEPCRICVC DTGTILCDEIICEEMRDCPSPEIPFGECCPICPTDQPAVSGQPGPKGQKGEPGDIKDVVG PRGPPGPQGPAGEQGPRGDHGDKGEKGAPGPRGRDGEPGTPGNPGPPGLPGPPGPPGLGG NFAAQMAAGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGTSG PMGPRGPPGPPGKPGDDGESGKPGKSGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG SKGEAGAAGAKGEAGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG PVGPSGAPGFPGGPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAPGNPGTDGIPG AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGIAGFKGEQGPKGESGPAG PQGAPGPAGEEGKRGGRGEPGAAGPVGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG LGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG QPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGASGPPGPSGPAGERGEQG SPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGLQG ARGLPGTPGTDGPKGATGPSGPNGAQGPPGLQGMPGERGAAGISGPKGDRGDVGEKGPEG APGKDGGRGLTGPIGPPGPSGPNGEKGELGPPGPSGAAGARGAPGDRGEPGAPGPAGFAG PPGADGQPGAKGEQGESGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGATG FPGAAGRVGPPGPNGNPGPAGPPGASGKDGPKGARGDGGPPGRAGDPGLQGAAGPPGEKG ESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRG PPGPVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGDRGETGAVGSPGAPGPPGSPG PVGPTGKQGDRGESGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTG LQGLPGPPGTSGDQGATGPSGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQVEKGPDPMRYMRADQASSDLRQHDVEVDA TLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNM ETGETCVYPNPASIPKKNWWTSKTKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF LRLLSTEGSQNITYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALADG CSKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDVGPVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgttcaactttgtggattcaaggactctagtgctgctggcagccgcccaggtcatttta ctagccgttgtcagatgtcaggaagaggatatccaggaggcaggcagctgtgtgcaggat gggcagaggtatagtgataaggatgtgtggaaacccgagccctgccggatctgtgtctgt gatactgggactatcctctgcgacgagataatctgcgaagaaatgagagactgtcccagc cccgagatccccttcggagaatgctgccctatctgcccaactgaccaacctgctgtcagc gggcaacctggccccaagggacaaaaaggggaacccggtgatattaaagatgtcgtagga ccaagaggaccacctggaccacagggacctgcaggggaacaaggaccaaggggcgaccat ggggataaaggcgaaaaaggtgctcctggccctcggggtagagatggcgaacctggtacc cctggaaaccccgggcccccagggctcccgggtcccccagggccccctgggcttggcgga aactttgctgctcagatggcggcaggattcgatgagaaggctggtggtgctcagttgggt gtgatgcagggacctatgggacctatgggaccgcgaggacctccaggaccatcgggagct cctggccctcaaggatttcaaggcaaccctggagagcctggggaacctggaacttctggt ccaatgggtccccgagggcctcccggaccacctggaaaacccggtgatgatggcgaatca ggcaaacccggcaaatctggagaacgcggatcccctggccctcagggggctcgaggcttc ccaggaaccccaggtctcccaggagtcaaaggtcacagaggttatcctgggttagacggc tccaaaggagaagcaggagctgcaggtgctaagggcgaagctggatcacctggtgagaac ggttctcctggtcccatggggccccgtggtctcccaggtgaaagaggacgtcccggccca tctggtgctgctggtgctcgtggcaatgacggtctccctggcccagctggcccccctgga cccgtcggcccctccggagctcctggattccctggcggcccaggctctaagggggaagct ggccccactggtgctcgtggccctgagggtgctcaaggccccagaggtgaatctggcact cctggctcccccggaccttcaggggcaccgggtaaccctggaactgacggcatccctggc gctaaaggatcagctggtgctcctggaattgcgggtgcccccgggttccctgggccacgt gggcctcccgggcctcaaggtgcaactgggcctctgggtcccaaaggtcagacgggagac cctggcattgcaggcttcaaaggcgaacaaggccccaaaggtgaatcgggccccgcaggg ccacagggagcacccggcccggctggcgaagaaggcaagagaggtggccgtggtgagccc ggtgctgctgggcctgttggaccccccggagagagaggctctcctggaaatcgtggcttc ccaggtcaggatggtctcgctgggcccaagggtgcccctggcgagcgtggtcctgctggc cttggggggcctaaaggagccactggtgatcctggacgtcccggagaacccggcctgcct ggcgcgaggggtctcactgggcgccctggtgatgctggtcctcaaggcaaagtcggtcct tctggtgcccctggtgaggacggtcgccctggcccgccaggcccacaaggtgctcgcggg cagcctggcgtcatgggtttcccagggccaaaaggtgctaacggcgaggctggtaaagct ggagagaagggattgcccggcgctcctggtctgagaggtcttcctggcaaagatggtgag acaggagcttccggcccccccggaccttccgggcctgctggagagaggggtgagcagggc tcgccaggtccttctggcttccagggactccccggccccccaggtcctccaggcgaaggt ggcaagccaggagatcagggcgtccctggcgaagctggcaccccaggcctcgtgggtccc cgaggtgaacgtggcttcccaggtgaacgtggctctccaggttcacaaggtctgcagggt gctcgagggctccccggaactcctggtaccgatggacccaagggtgcgactggtccgtcc ggccctaatggtgcccaaggtccccctggtctgcaagggatgcccggtgagaggggagca gctggtatttctggaccaaagggagacaggggtgatgtcggcgagaaaggcccagaaggc gctcccggcaaggacggtggaagaggtttgacaggtccgatcggcccccctggcccttct ggccccaacggcgagaagggtgaattgggtcccccaggcccatctggtgctgccggcgcc cgcggtgccccgggtgatcgtggtgagcctggagcccctggccctgctggatttgctgga cctcccggcgctgacggccaacccggcgctaaaggtgaacaaggagaatctggccagaag ggagacgctggggccccgggtccacagggttcttccggtgctcctggtccacagggtccc actggtgtgactggtcctaaaggagctcgaggtgcacagggaccccctggagccaccgga ttccccggcgctgcaggacgtgttggccctcccggccctaacggtaacccaggccccgct ggcccaccaggtgcttctggcaaagatggtcccaagggcgctcgtggtgatgggggccca ccgggccgtgctggtgaccctggtctccaaggcgctgcaggtcctcctggtgagaaggga gagtccggggaagatggcccacctggggccgatgggccacccggtcctcaaggtttggca ggccagcgaggtattgtcggtcttcccggccagcgtggtgagagaggtttcccggggctg ccgggtccctccggtgagcctggcaaacaaggagcccctggaggtgccggcgaccgtggg ccacctggtcctgtgggccccccaggtctgactggtccctctggtgaacctgggcgcgag ggcacccccgggtctgatggcccccctggcagagatggcgcagctggagtgaagggtgat cgtggtgagactggtgctgtcggttctccaggtgctcctggccctcctggctccccaggt ccggttggtccaactggcaaacagggagacagaggagaatctggcgctcaaggccccatg ggtccctctggacccgcaggcgcacgtggcatgccgggtcctcaaggtcctcgtggtgac aagggcgaagctggagaggctggtgagagaggtctgaagggtcaccgaggattcactggt ctgcagggtcttcctggacctcccggtacatctggagatcaaggtgctactggtccatct ggtccttctggtcccaggggtcccccaggccctgttggtccctctggcaaagatggttca aatggcatgcccggtccgattggtcctccaggtcctcgtggtcgtagtggcgaaaccgga cctgctggtccccctggaaaccctggaccccctggacctcctggccccccaggccccggc attgacatgtcggccttcgccggtttgggccaggttgagaaaggccctgaccctatgcgc tacatgcgagctgaccaggcctctagcgacctgcgccagcatgatgttgaggtcgacgcc actctgaaatccctcaacaaccagatcgaaagcatccgcagccccgagggctccaagaag aacccagcccggacctgccgtgaccttaaactctgccaccctgagtggaagagcggtgac tactggatcgaccctaaccagggctgtaccttggatgccattaaggttttctgtaacatg gagactggcgagacatgcgtctatcccaaccccgccagcattcccaagaagaactggtgg accagcaagaccaaggagaagaagcatatctggtttggagagaccatcaatggtggattc cattttagctatggagatgacaacctggcccctaacactgccaacatccagatgaccttc ctgcgcctcctgtccaccgaaggctcccagaacatcacctatcactgcaagaacagcatt gcgtacatggacgaggcttccggcaacctgaagaaagccatcctgatacagggatccaat gacgtcgagatcagagctgagggcaacagcagattcacatacagtgccttggcggatggc tgctcgaaacacactggcaaatggggcaagacagtcattgaataccgatcacagaagacc tcgcgcctgcccatcatcgatattgcccctatggacattggtggggccgatcaggagttt ggcgttgacgttgggccagtctgctttttgtaa

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