Caretta caretta (Loggerhead turtle): 125629388 Help Entry 125629388         CDS       T09292                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism ccay  Caretta caretta (Loggerhead turtle) Pathway ccay03030   DNA replication ccay03410   Base excision repair ccay03420   Nucleotide excision repair ccay03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ccay00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     125629388 (LIG1)    03410 Base excision repair     125629388 (LIG1)    03420 Nucleotide excision repair     125629388 (LIG1)    03430 Mismatch repair     125629388 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ccay03032]     125629388 (LIG1)    03400 DNA repair and recombination proteins [BR:ccay03400]     125629388 (LIG1) Enzymes [BR:ccay01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      125629388 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      125629388 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      125629388 (LIG1) DNA replication proteins [BR:ccay03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     125629388 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      125629388 (LIG1) DNA repair and recombination proteins [BR:ccay03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      125629388 (LIG1)    NER (nucleotide excision repair)     Other NER factors      125629388 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      125629388 (LIG1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  125629388 NCBI-ProteinID:  XP_048690783 LinkDB All DBs Position Unknown AA seq 953 aa AA seqDB search MMQRPITSFFQPMKAVKEEEKIRLPAEEDSASQVSEAAVIQRNGLSLCMDSPVKSAAKRP LRRVLESDSDEEEAVLTAQAEVDPIQEKSSEKASSKEEPMQTPQSDLSADSPSPSSSHSA GDSPALSDSPAIGRAGIPRRRTARKQIPKRKIELPTSRENNRDEEPSAKRCREEQGPGDE VGRGAKEEAAMDMQEVKGQHSEIELAEVNGTLEEGAVNKGEEDCTKGGAQEKPEPPKPSR AIASFFAPKKVAVARAGKADEHAAVEIPPAPTGSATASSNGSDGTAGSFSKLVVPLDPME YNPSKSSYHPIQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSPS DILPCIYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAES SRSNQRTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITRS LGGKLRIGLAEQSALSAIAHAVSLTPPAQGFPPEVLDAGQGKSAEARKTWLEEQTQILKQ TFCELPSYDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTC EYKYDGERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGSLRSCILDAEAVAW DPEKRQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKEPFSRRRQLLHES FVETEGEFLFATSMDTSSLDEISEFLDQSIKDSCEGLMVKSLEVDATYEIAKRSHKWLKL KKDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEEIL EKHYSFLKDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEE KGISLRFPRFLRVRDDKKPEEATTSSQVAELYKQQQQIQNQQPVEKAEEEDFY NT seq 2862 nt NT seq  +upstreamnt  +downstreamnt atgatgcagcgccccatcacgtcatttttccagcccatgaaggcagtgaaggaggaggag aagatcagactgccagcagaagaggactcagccagccaggtgtcagaggcagctgtgata cagagaaatggcctaagcctctgtatggactccccagtgaaatccgctgccaagaggccc ctgcgccgggtcttggagagcgacagtgacgaggaggaggccgtgctgacagcccaagca gaggtggatcccatacaggaaaaaagctcagagaaagccagcagcaaggaggagcctatg caaactcctcagtctgatctttctgcggatagcccctcaccaagcagtagccactccgct ggagacagcccggccctttctgactcccctgccattggccgtgctggcatccccagacgc aggacggctcgcaagcagatccccaaacgcaaaatagagctgccaactagcagggagaac aacagggatgaggagccaagtgccaagagatgccgggaagagcaaggcccaggagatgag gtaggcaggggagcaaaggaagaagcagccatggacatgcaagaggtgaaaggtcagcat tcggagatagaactggctgaagttaatggcactttggaggagggggctgtgaacaaggga gaagaggactgcactaaagggggagcccaggagaagcctgagccacccaagcccagcaga gccatcgccagcttctttgcccccaagaaggtggcagtggcaagggcagggaaggcagat gaacatgcagcagtggagataccacctgccccaactggctcagccacagcgagcagcaat gggagtgatggcacagctggcagtttctccaagctagttgtgccactggaccctatggag tacaatccttcgaagagcagctaccaccccatccaggatgcctgctgggggcatggtcag agggtcccctacctggctgtggctcggacctttgagcggatcgaggaggtgtctgcccgg ctgaagaacattgagaccctgagcaacctcttccgctcggtgatcgccctgtcgccatcc gacattctgccctgcatctacctctgcctgaaccgcctgggccctgcctacaaggggctg gagctgggcattggcgagaccatcctcatgaaggctgtcgcacaggcaacgggccgccag ctggatcagatcaaagccgaggcccaggagaagggggatctgggcttggtagcagagagc agccgcagcaaccagcgcaccatgtttacgccgcccaagctgagtgctgctggggttttc agcaagctacaggagattgccaggatgacaggcagtgcttccatgaacaagaagatcgac atcatcaaagggctgtttgtggcctgccggcactcggaagctcgctacatcactcggtcc ctgggcgggaagcttcggattgggctggcagagcagtcagcgctgtcagccattgcccat gccgtgtctcttactcccccggcacaagggtttcccccagaggtactagatgctggccag ggcaagtctgcagaggcacgcaaaacctggctggaggagcagacccagatcctcaagcag accttctgtgagttgcctagctatgacatcatagtgcccatcctgctggagcacggagtg gagagcctgccacagcactgcaagatcaccccagggatcccgctgaagcccatgctggcc cagcccaccaagggcattggggaggtgctgaagcgctttgaggaggctgccttcacctgc gagtacaagtatgatggggagcgagcccagatccacatcctggagaatggcgatgtgcac atctacagccgcaaccaggaggacaacacctccaaataccctgacatcatcagccgcatc cccaaggtgaagaagggcagtctgcggtcgtgtatcctggatgctgaggccgtggcctgg gaccctgagaagaggcagattcaacccttccaggtcctgaccacgcggaagcgcaaggat gtggaagctgctgagatcaaagtgcaggtgtgtctgtatgccttcgacattctgtacctc aatggggagtccctagtgaaggagccattttccaggcgccgtcagctgctgcacgagtct tttgtggagacggagggggagttcttgtttgccacctccatggacacctccagcctggac gagatctctgaatttcttgaccagtccatcaaagactcctgcgagggcctcatggtcaag tccctggaggtggatgccacgtacgagatcgccaagagatcccacaagtggctgaagctg aagaaggattacctggaaggtgttggtgacactctggacttggtggtgattggtgcctac ctgggtaagggcaagcgagtaggcatgtatggcggcttcctgctggcctgctatgatgag gagagtgaagagtaccagagcatctgcaagattgggactggcttcacagaggagatcctg gagaagcattacagcttcctgaaggaccatgtgctagagaagccacggccctattaccgc tgggatagcagcactgagcccaaccactggctggcagctgtgcaggtgtgggaagtgaag tgcgctgacctgtccatctctcctgtgcacaaggcagctataggtctggtggatgaggag aagggcatctccctgcgctttccccggttcctgcgcgtgcgtgatgacaagaagcctgag gaagccaccaccagttcccaggtagctgagctctacaagcagcagcagcagattcagaac cagcagcctgtggagaaggctgaggaggaggacttctactag

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