Caretta caretta (Loggerhead turtle): 125630298
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Entry
125630298 CDS
T09292
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccay04121
]
125630298 (PDZRN4)
Enzymes [BR:
ccay01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125630298 (PDZRN4)
Ubiquitin system [BR:
ccay04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125630298 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-RING_2
Sina_ZnF
zf-RING_5
zf-C3HC4_3
zf-TRAF
zf-rbx1
PDZ_Tricorn
TRAF3_RING
zf-RING_6
IBR_1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
125630298
NCBI-ProteinID:
XP_048691976
LinkDB
All DBs
Position
1:complement(291588635..291982195)
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AA seq
1064 aa
AA seq
DB search
MGFDLDRFAEPVDPDLKCKLCSKVLEEPLSTPCGHVFCAGCLLPWAVQRRLCPLQCQPIS
AKELHQVLPLRSLIQKLEIKCDYSPRGCGRTVRLHQLAAHVEMCDYSPARCRHKGCPEVL
SLKDVDAHMRESCEHRPAGICQQGCGLVLLQRDLAGGAPPGRGHCCVRALRSQNGSLQGQ
RASLEQELKRQALKWSKREKSLLAQVAALQSEVQLTALRYQVKFNQYMSHISSITKNLAG
SHPCKGGEPKPLTIMLQKENDTLGFNIVGGRPNQNNQEDSSPEGIYVSKILEDGPADKTE
GLQIHDKIIEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRAPINKTHGSSQDVQLMDA
STQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSLHPVEHEFYEGNEYLSSLPADA
DRTEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAARDGRIREGDR
ILQINGQDVQNREEAVALLSSDECKKIVLLVARPEMQLEEGWLDDERNEFLEELNLEMLE
EQHNEVMQYTANEVEQPKKHEEEDGTTDTATSSSNNHEKDSGVGPTDESLRNDESSEQEN
APDEQNKTTLQSTRELGQSQDTLGSIELQCNESFVSGEYIESDFIGNQDEECERFRQLLE
LKCKIRNHGEYDLYYSSSTIQCNRREQDGVEHELQLLNEELRNIELECQTIMQAHRLQKV
KDQYGDIWALHDGGFRNYNTSIDVQRGKLDDIIEHPEKSDKDSSSAYNTAESCRSTPLTV
EQSPDSSLQRMISITNRKNLRSTIVANQLCTGQSGREVTPSKTKTTEQNSTVEEKETIAE
SSKFTEQEKQSTEHIPYLSPYHSSSYRYGNIPAHAKHYQSYMQLIQQKSAVEYAQSQLSL
VSMCKDSQKCSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTM
SEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINILELSH
KKMMKKRNKKILDSWMTIQELMTHGAKSPDGTRVHNAFLSVTTV
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgacctggatcgctttgccgagcccgtagacccggatctcaagtgcaaactc
tgcagcaaggtgctggaggagccgctgtccacgccgtgcgggcacgtcttctgcgccggc
tgcctgctgccctgggcggtgcagcggcgcctgtgccccctgcagtgccagcccatctcg
gccaaggagctgcaccaggtgctgcccctcaggagcctcatccagaagctggagatcaag
tgcgactacagcccgcggggctgcggccggaccgtgcggctccatcagctggccgcccac
gtcgagatgtgcgactacagcccggcccgctgccgccacaagggctgcccggaggtgctc
agcctgaaggacgtggacgcgcacatgcgggagagctgcgagcaccgcccggccggcatc
tgccagcagggctgcggcttggtgctcctgcagcgggacctggcggggggcgcgccgccg
ggccggggccactgctgcgtgcgggcgctgcgcagccagaacggcagcctgcaaggccaa
agggccagcctggagcaggagctgaagcgacaggccctgaagtggagcaagagggagaag
tcgctgctggctcaggtcgcggcgctgcagagcgaggtgcagctgacggcgctcaggtac
caggtgaagttcaaccagtacatgagccacatcagcagcatcaccaagaacctggcaggc
agccacccctgcaagggaggagaacctaagccattaaccatcatgctacaaaaagaaaat
gatactttgggattcaatattgtaggaggacgacccaatcagaacaatcaggaggattct
tcacctgaaggaatttatgtgtcaaaaatcttggaagatggacctgctgacaagacagaa
ggcctgcaaattcatgacaagatcattgaggtcaatgggaaggacctctccaaggccact
catgaagaggcagtggaagcttttcggaatgccaaggaaccaattgtagttcaggtttta
cggagagcacccattaataaaacacatggtagctcacaggatgttcagcttatggatgct
agcactcagaccgacatcacctttgagcacattatggctctcgccaagcttaggccatct
acacctccagtaccagatatctgtccctttctgctttcagacagctgccattctcttcac
ccagtggagcatgaattttatgaaggtaatgagtatctttccagccttcctgctgatgca
gatagaacagaggactttgagtatgaggaggtcgagctgtgtcgtgttagcagtcaagag
aagctggggttgactgtctgctacagaacagatgatgaggaagacacaggaatctatgtc
agtgaggttgatccaaacagcatcgccgcccgagatggccggatccgagaaggagaccgc
attttgcaaataaatggccaagatgtccagaatcgggaggaggcggtggcattgctttcc
agtgatgaatgcaagaaaattgtgttgctggttgcaagaccagagatgcagctggaggag
ggatggcttgatgatgaaaggaatgaattcttagaggagttaaacttggaaatgttggaa
gaacagcataatgaagtaatgcagtacacagccaatgaggtggagcagccaaaaaagcat
gaggaggaggacggcacaacggacactgcaacctcgtcatccaataaccatgagaaggac
agtggagtggggcctacagatgagagtctacgtaatgatgagagctcagagcaggagaat
gcacccgatgagcagaacaaaacgaccctgcagagcacccgggagctggggcagagccag
gatacgttaggaagcattgaactccagtgcaatgaaagctttgtgtctggggaatacatt
gaatctgatttcattggaaaccaagatgaggagtgtgaaaggtttcggcagctgctggag
cttaagtgcaagattagaaaccatggagagtatgatctgtattactcgagcagtacgata
cagtgtaacagaagggagcaagatggggtggagcatgagctacagttactcaatgaggaa
ctgagaaatattgagcttgagtgtcagactataatgcaggctcataggcttcaaaaagtg
aaggatcagtatggagacatttgggcattacatgatggaggattcaggaattataacacc
agcatagatgtacaaagaggtaaactggatgacatcatagagcacccagagaaatctgac
aaagacagctccagtgcttacaacacagcagaaagctgcaggagcactccactgactgtg
gagcagtcccctgatagctcgctccagagaatgatcagcatcaccaacaggaaaaacctg
agaagcacaattgtagctaatcagttgtgtactggacagagtgggagggaggtaacccca
tccaaaaccaaaaccactgagcaaaacagcactgttgaagagaaggaaaccattgcagaa
agtagtaaattcacagagcaggagaagcaaagtactgagcacattccttacctgtctccg
tatcatagctcttcatacaggtatgggaatatacctgctcatgcaaagcattatcaaagt
tatatgcagctgatccaacagaaatctgcagtggagtatgcccaaagtcagctcagtcta
gtgagcatgtgcaaagattcacagaagtgttcagagcccaaaatggaatggaaagtgaaa
ataaggagtgatggaacaaggtatattactaagagaccagtgcgagacagaatcctgaag
gaacgtgccttaaagattaaagaggagcgcagtgggatgacgacagatgatgatacaatg
agcgaaatgaagatgggtcgttactggagcaaagaggagcggaagcagcatttggtgcga
gccaaggagcagaggcggcggcgagagttcatgatgcggagcaggttagagtgtcttaag
gaaagtccacaaagcggcagcgagggcaaaaaagaaattaacattcttgaacttagtcac
aaaaagatgatgaaaaaaagaaacaagaaaatcttggacagctggatgacaatccaagaa
ctgatgacacacggtgctaagtctccagatgggacaagagtgcacaatgcctttttatcg
gttactactgtatga
DBGET
integrated database retrieval system
