Caretta caretta (Loggerhead turtle): 125630360
Help
Entry
125630360 CDS
T09292
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03018
RNA degradation
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125630360 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
125630360 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125630360 (LSM8)
03041 Spliceosome [BR:
ccay03041
]
125630360 (LSM8)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125630360 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
125630360 (LSM8)
Spliceosome [BR:
ccay03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125630360 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
125630360
NCBI-ProteinID:
XP_048692130
LinkDB
All DBs
Position
1:300213180..300218959
Genome browser
AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacttccgcgctggagaactacatcaaccgtactgttgcagtaattacttctgatgga
agaatgattgtgggaaccctcaaaggttttgatcagaccatcaacttgattttggatgaa
agccatgaacgagtgttcagttcttcacaaggagttgaacaagtagtattgggattgtac
attgttcgaggagataatgttgctgtcattggtgaaattgatgaagagacagattcagca
cttgacttggggaatattcgagcagaacctttgaactcagtagcacactga
DBGET
integrated database retrieval system
